Genomic Location: contig_7:7921128...7945737
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families
| CDS |
| FUN_009455-T1 |
| Transcript |
| FUN_009455-T1 |
| Protein |
| FUN_009455-T1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20931 all species → | Dicer_platform | Dicer, platform domain | Domain | Interproscan |
| PF20930 all species → | Dicer_PBD | Dicer, partner-binding domain | Domain | Interproscan |
| PF00636 all species → | Ribonuclease_3 | Ribonuclease III domain | Family | Interproscan |
| PF02170 all species → | PAZ | PAZ domain | Domain | Interproscan |
| PF00271 all species → | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF04851 all species → | ResIII | Type III restriction enzyme, res subunit | Family | Interproscan |
| PF20932 all species → | Dicer_dsRBD | Dicer, dsRNA-binding domain | Domain | Interproscan |
| PF03368 all species → | Dicer_dimer | Dicer dimerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036085 all species → | Homologous_superfamily | PAZ domain superfamily | Interproscan |
| IPR000999 all species → | Domain | Ribonuclease III domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR048512 all species → | Domain | Dicer, platform domain | Interproscan |
| IPR048513 all species → | Domain | Dicer, partner-binding domain | Interproscan |
| IPR014001 all species → | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR038248 all species → | Homologous_superfamily | Dicer dimerisation domain superfamily | Interproscan |
| IPR036389 all species → | Homologous_superfamily | Ribonuclease III, endonuclease domain superfamily | Interproscan |
| IPR001650 all species → | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR003100 all species → | Domain | PAZ domain | Interproscan |
| IPR006935 all species → | Domain | Helicase/UvrB, N-terminal | Interproscan |
| IPR044441 all species → | Domain | Dicer, double-stranded RNA-binding domain | Interproscan |
| IPR005034 all species → | Domain | Dicer dimerisation domain | Interproscan |
| IPR014720 all species → | Domain | Double-stranded RNA-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14950 all species → | DICER-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004525 all species → | Molecular Function | ribonuclease III activity | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0004530 all species → | Molecular Function | deoxyribonuclease I activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006309 all species → | Biological Process | apoptotic DNA fragmentation | Interproscan |
| GO:0016442 all species → | Cellular Component | RISC complex | Interproscan |
| GO:0030422 all species → | Biological Process | siRNA processing | Interproscan |
| GO:0031054 all species → | Biological Process | pre-miRNA processing | Interproscan |
| GO:0090501 all species → | Biological Process | obsolete RNA phosphodiester bond hydrolysis | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0016891 all species → | Molecular Function | RNA endonuclease activity, producing 5'-phosphomonoesters | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11592 | DICER1, DCR1; endoribonuclease Dicer | EC:3.1.26.- | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of FUN_009455-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| holobiont · low.pH_high.temp | 20 | 1 | 0.58 | 11.60 | |
| holobiont · low.pH Control.temp | 20 | 0 | 0.00 | 0.00 | |
| holobiont · control.pH_high.temp | 20 | 2 | 0.80 | 9.16 | |
| holobiont · control.pH Control.temp | 19 | 3 | 2.72 | 28.61 | |
| Whole organism | 4 | 4 | 4.33 | 6.16 | |
| unannotated | 1 | 1 | 1.92 | 1.92 | |
| live coral tissue/skeleton | 1 | 1 | 3.47 | 3.47 |
Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM,
StringTie quantification over 85 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
