Detailed information of FUN_009519-T1 in Acropora pulchra

Genomic Location: ptg000004l:7953387...7964783
NR annotation: XP_044169278.1, LOW QUALITY PROTEIN: core histone macro-H2A.1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q02874Core histone macro-H2A.1 OS=Rattus norvegicus OX=10116 GN=Macroh2a1 PE=1 SV=5
O75367Core histone macro-H2A.1 OS=Homo sapiens OX=9606 GN=MACROH2A1 PE=1 SV=5
O93327Core histone macro-H2A.1 OS=Gallus gallus OX=9031 GN=MACROH2A1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000315 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01661
all species →		MacroMacro domainDomainInterproscan
PF16211
all species →		Histone_H2A_CC-terminus of histone H2AFamilyInterproscan
PF00125
all species →		HistoneCore histone H2A/H2B/H3/H4DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002589
all species →		DomainMacro domainInterproscan
IPR043472
all species →		Homologous_superfamilyMacro domain-likeInterproscan
IPR002119
all species →		FamilyHistone H2AInterproscan
IPR035796
all species →		DomainCore histone macro-H2A, macro domainInterproscan
IPR032454
all species →		DomainHistone H2A, C-terminal domainInterproscan
IPR007125
all species →		DomainHistone H2A/H2B/H3Interproscan
IPR009072
all species →		Homologous_superfamilyHistone-foldInterproscan
IPR032458
all species →		Conserved_siteHistone H2A conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23430
all species →		HISTONE H2AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000786
all species →		Cellular ComponentnucleosomeInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0030527
all species →		Molecular Functionstructural constituent of chromatinInterproscan
GO:0000790
all species →		Cellular ComponentchromatinInterproscan
GO:0006342
all species →		Biological Processheterochromatin formationInterproscan
GO:0046982
all species →		Molecular Functionprotein heterodimerization activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11251H2A; histone H2A-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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