Gene detail

Detailed information of FUN_009586-T1 in Colpophyllia natans

Genomic Location: contig_12:4854707...4859024
NR annotation: XP_020626211.1, solute carrier family 52, riboflavin transporter, member 3-B-like [Orbicella faveolata]
Species abbreviation CNATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_009586-T1

CgagccaaacaaaaaaaacctccATCATTATCGAATCATGTGAAAGCGATTATGTAACGTTTTCAATAATTTGGGATGAAAAATTGTGGTTAAAATTCGTTTTGATTCCGATATGGATACTCCGGAAACTTCTACACGAGTCTCACGCTGGAAGGCATTGTGTCAAACACACGAGATTTCCTGGCCAACTTACGTGCTGATTTGTTTATTCGGTATGGGTTCGTGGATAGCGGTGAATGGTTTGTGGGTGGAATTGCCAGTTTTAGTGAGGTATGCCCCCGAGCGATGGAATCTTCCATCCTACCTTACCGTTATCTTCCAACTGGCTAATATCGGCCCGGTGATCTACGCGCTGGGGAATTACTTCGCTCCTAAAAAAGTCCAGGAAAAGACTGCCATATTTTTCATTGTCACTGTAGGCACAGTGGCTTGTGCTTTGCTGGCATTTTTCTGGGACGAAACGAGTAACATTGGCGGTGAGGAACACAGCACAGTTCTTTTTATACTGTCGTTTTGCGTGGCCATAGTCGATTGTACATCGTCTGTTGTTTTCCTGACATTCATGTCTATATTTCCTTCGTTTTATATGGGTGCCTTGTATGTGGGTGAAACAAGCAGCGGTTTGCTTCCTGCTTTTGTTGCCCTGGGTCAGGGAATTAGCAGTAAAAGTGTTAATTGCAGCGCAAATGCGACAGAAGCTTCTTCTGGTGGTCAAACCACAAAGGATGGTAGTGGATTAAGATTTCCCCCagaagattttttcttttttctgtttgcaATGATGGTTGCTTGTGGGTTGGCGTTTTTTGCTTTGAACTATTTACCACTGACTAGAAGACAGCATGTGAGAGAAAAGCGCAGCAGTACAACTGTAGAAGAAACTGACAGCGTTACTCGGCCACTTTGGGATGAGTCTTCAAGAAGTGTTTCATATTCCTCATCAACAAGCACCACTACTCCTGTAGACTTTTACATAAAAGATACATCAATTTACAGTCAGGGACTCTCACACTGTGAAGCACACATCTTATATCTGCTGTGTATTCAAGGGTGGATTAACTGCTTGGCCAATGGTGTGCTGCCATCAATAACCACATATGCCAGTGAACCTTACAGTGACAAGACATATCATTTAGTTGTCACACTATCCAACATCATTGGCACTCTGACCTGTTTTGTCGCACTGTGGTTACCATGTTCTTCAACCAAGGTGATCTTTGTATTAGCCAGCATTTTCACGGTTCTAAGCAGTTATGTTGTTGCTCTTGCATCCATGAGCCCAACTCCACCACTTCATGGTACAACACTTGGAAGCTTCATAGTGATTGctgttagtattgtaagtagcaTTTTGCTTAACTACACCAAATTAACAATCTCAACCATAATGCGTGATCATGGTAAACGAGCACTCTTTTGGTGTGGAATCGTTATGCAGGTAGGATCATGTATCGGGGCACTGGCCATGTTTCCGCTGGTAAACATACTAAAGGTGTTCCATGAACCAATCAGCTGCTAAGGAAAAGACTGACTTAAGTTGCAAGTTTTTAACGCTATAAACAACAAACAGACCTTTTAGTTTAAATAAGTGATGTGTTTTAAAGTgaccttttttaaacaaaagtaCACATATATAGAGGTATGGTTTACTCTTTGAGTAGGCAGATGATTAGAAATGAGATGTACGATTTAATAGGAGCATTTTGCATGTTAAAGGTGTTATGTCTTCTTTGAATCTTCTAATTTTCAAATACAAACTGTAAGAATGCAATGTTAGTTTAAAACTGTGATTGCTTTTATTGTCATTTGATAGTGGTTCCTGGCTGTTCTTATCAAGTAAATCTTTTACTTGATTTCTCTATTGTTCCTCTGTTGTAAGCATGTGGAATTTAACAGACTAAAAAGAGAAGTCAGCATCTAGCATGACATTTACAGTGAAGATCATGCAAgaacaaaatcaaatttcaaGATAATTTCTGAAGAATCTATCATGCAAAATGACTGTGttgtaataattaattaaaaggtGCAAGCATGATGTAAGTTGGAAAGAACACTTATTGTTTATAATGACAGTAAGGTTTGCTTTTTGTATAGAGAAACCaagttatttaattattttaatgaataattcATGATAAATTATTTGCTTTGGGATGTTATAATTAGGGTAAGCTTTGTAAATTATTCATGGAAGGCATGGCCTCTGCATAAATTCAGCTTGGTTCTTTGCAGTTTGTTATTAGTCAGTAAGTTAAGTTTTATGTGAGAGTTAATTGGGGGTCCACATGGTCTGTAAGTAGCATGTCTGAGCTAGTAATAATTTTTGGTAACAAATTGTATTTTTTgataaatattgtttttcagaAATAATAAGTACACCCAAGTTAGTGATgcttttttgtaaattatgCTTAATATTGACAAAATAAAGTACAACATCAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GMG6	Solute carrier family 52, riboflavin transporter, member 3-B OS=Danio rerio OX=7955 GN=slc52a3b PE=2 SV=1
Q9D6X5	Solute carrier family 52, riboflavin transporter, member 3 OS=Mus musculus OX=10090 GN=Slc52a3 PE=1 SV=3
Q4FZU9	Solute carrier family 52, riboflavin transporter, member 3 OS=Rattus norvegicus OX=10116 GN=Slc52a3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001817 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06237 all species →	SLC52_ribofla_tr	Solute carrier family 52, riboflavin transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009357 all species →	Family	Solute carrier family 52, riboflavin transporter	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12929 all species →	SOLUTE CARRIER FAMILY 52	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0032217 all species →	Molecular Function	riboflavin transmembrane transporter activity	Interproscan
GO:0032218 all species →	Biological Process	riboflavin transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14620	SLC52A3, RFT2; riboflavin transporter 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.