Genomic Location: ptg000004l:10091737...10119630
NR annotation: XP_015749367.1, PREDICTED: S-phase kinase-associated protein 1-like isoform X2 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families
| CDS |
| FUN_009665-T1 |
| Transcript |
| FUN_009665-T1 |
| Protein |
| FUN_009665-T1 |
| UniProt accession | Description |
|---|---|
| Q9WTX5 | S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3 |
| Q6PEC4 | S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 SV=3 |
| Q3ZCF3 | S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003543 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 adaptor Cullin RING|SKP1 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01466 all species → | Skp1 | Skp1 family, dimerisation domain | Domain | Interproscan |
| PF03931 all species → | Skp1_POZ | Skp1 family, tetramerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016897 all species → | Family | S-phase kinase-associated protein 1 | Interproscan |
| IPR016072 all species → | Domain | SKP1 component, dimerisation | Interproscan |
| IPR036296 all species → | Homologous_superfamily | SKP1-like, dimerisation domain superfamily | Interproscan |
| IPR011333 all species → | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| IPR016073 all species → | Domain | SKP1 component, POZ domain | Interproscan |
| IPR001232 all species → | Family | S-phase kinase-associated protein 1-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11165 all species → | SKP1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0031146 all species → | Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0097602 all species → | Molecular Function | cullin family protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03094 | SKP1, CBF3D; S-phase kinase-associated protein 1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora pulchra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora pulchra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
