Gene detail

Detailed information of FUN_009665-T1 in Colpophyllia natans

Genomic Location: contig_12:5896255...5917793
NR annotation: XP_020617565.1, uncharacterized protein LOC110055518 isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_009665-T1

ATGTGTTTGAGATCACAAGGCAGAATTCGAATCCGTGCAGTTTTCTTGGGCGTGCTTATTGGCCTGGGGCTGGCGGGTTTTGTGGTCATGTGGACGCACTTACGTGTTTCCATGAAGCAGAAGCCTACAGTAAGACACAACACTGCAGAAAACGATTTCCATAAACAGGCTGCTGTGATCACTAGATCAGttggaaaacaaacaagcaaagaTAAACCTGATACACAAGAAAGTAAACAGAGCGCATTAAATGATAAAACTACGGTTAACGATGATGCTATTTCTTCAGATACAGTTAACTCCCAGATCAACCTGTACAAAGCTTATGGTCACATCAAAACCATCTTGTTTTTCATTGGTTATTCGCGCAGTCGTCACACTCTCCTTGGTTCTTTACTGGATGCTCACCCGCACATGGTTATAGGAGACGAAACAATGGCTCTCTTCAAGTGGAACTCAAAACGAGACGTATGGATGAACAGCTCAATATACACGTATTTTGACATCATGACCCGCTCTTCACAACGTGCAGTCAGTCAGGGAAGAAGATCTGAATTATTTGACGGAAGTGTTGCAAACGCAACCTCTAACTTCCGCTATTATGTTCCAAACCAATGGCAAGGAACCTTTGATCAGTATATTGAGGTCATTGGAGACAAATCAGGGGCGTATTCATCTATTACAATGAATAGAAAGAATGGGGTAGACGCTGTTCACCTTTTAGAGAATACTGCGGGCGCTAAGGTAAAATTCGTCCATGTTGTAAGAAATCCATTTGACAACATTGCCACCATGGTCCTGGAACACAAAAACATCAAGGCACGATATGGAGAACACAAAGTAAAGGTTAAGGCTCCTGAAgaagttgaaagaaaaacaaatttttactTTAGTTTGGCTAAGGGATGTAACAAGGCAAGGGAAGCTTTTCCGGGCAGCTTCCTTGATGTGCCAAGCATGGACATCGTTACGAAACCTCTGGAGACCCTGAGAAGAGTCTGTCAGTTCCTGGAAATCACGTGTACAGAGCAGTATCTCCAGGACTGCGCAGCCACTGTGGACCCGGTCCCTTCCATAACACGTGATTTTATAGAATGGACCGCTGAACAAAAGAACACTGTGTATGACATGATGAAACAGTATCCGTTTTTCGAAGGGTATTCTTTTGATAGCAGTGAGATGGCATCTCCGATCCAGAAAAAATTAGCAAAACATCTCGAGTGTCCTATTTGCTTGGAAAAGTTCACGGAGCCTAAAGTGCTGTGGTGTCAGCACTCCTACTGTAGAAGGTGCCTCGAGAAACTTGTGAGACGACTGGAACAAGAGGATTACGAGGTCACGTGTCCTGAATGCAGAAAGAGTACTAAGGTTCCGGGTGGTGATATCAATATTCTTCCATCAAACTTCCTGATAAATAATCTTTTGGCACTTCACGATGACAACGAACCTCAAAAGACGAATGCGACCTGTGCAAAGCATGATGGGGAGACGCTGAAACTCTTTTGCCAAACCTGCGAAGAGCCTATATGCCGTGACTGCACTGTTATTGATCATCATGGCCACAGGTACTCATTTataaaagatttattttttGCCGAGAAAGACAAAACTTTAAAGCTTGTGCAAGAGTCGAGAGCGGCAATTTGTGCCTTGGAATCAACTATAGAGACCGTCGATATACAAGAAGGAAAGCTGCAAGAAAATTCACGAAACGTTCAACGGTGTATCGACAGTTTCATAAACGCACAAAGTGAAATTCTGAAGAAACAaggggaaaatttgaaaaatgaacTACAGAAGCCAATTTCAAATCAAGAAGAAATTTTTCAGATCCAGAAGGATTCCCTATTCTTGTCTCTTGGCTGTTTGAAGAGCAGCGTGGAGTTCATCGAGAAAGCACTTTCTGGAGGAAATGAAGTAGAAGTTTTAACATCCAAAGGTCAATTGTCCAAGCATTTCAATCAAGCTACAGCGTTAGCGCAAGTAAAACCGCATGATACTATTTGTGGTTCAAATTAG

Transcript

FUN_009665-T1

Protein

Uniprot

Gene family

Uniprot term	Description
D3ZQG6	Tripartite motif-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Trim2 PE=1 SV=2
Q9ESN6	Tripartite motif-containing protein 2 OS=Mus musculus OX=10090 GN=Trim2 PE=1 SV=1
A4IF63	Tripartite motif-containing protein 2 OS=Bos taurus OX=9913 GN=TRIM2 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13469	Sulfotransfer_3	Sulfotransferase family	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan