Detailed information of FUN_009807-T1 in Siderastrea siderea

Genomic Location: contig_7:12529412...12561965
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_009807-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR049733
all species →		DomainCoiled-coil domain-containing protein 61, N-terminal head domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22691
all species →		YEAST SPT2-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005813
all species →		Cellular ComponentcentrosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16755CCDC61; coiled-coil domain-containing protein 61-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_009807-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
65TPM > 0
7Conditions
354.6Max TPM
117.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 16 148.10 335.53
holobiont · low.pH Control.temp 20 14 101.44 354.63
holobiont · control.pH_high.temp 20 16 141.62 340.94
holobiont · control.pH Control.temp 19 13 107.81 245.52
Whole organism 4 4 27.25 35.95
unannotated 1 1 19.95 19.95
live coral tissue/skeleton 1 1 20.69 20.69

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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