Gene detail

Detailed information of FUN_009817-T1 in Acropora pulchra

Genomic Location: ptg000004l:12057557...12084031
NR annotation: XP_044181475.1, probable ubiquitin carboxyl-terminal hydrolase MINDY-4 isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_009817-T1

ATGGCAGATGCTATTATCGTTGCACTGACGGCTTCTCTTGTTAGGGAATATTTAAGTAGAAAGGGGCTGAAGTCTACACTTCAAACCCTTGACAAAGAGCTTCCACGAACAGAGGAAAGCATCAGCAATCGTGCACAGCTGGCCAAAGAAATGCACATTGAAAAGCTCATGAAGAAAAACAAGGAGCTCCCAGAACCATTTCGTACCATGTTAGAAGTTATTGTTAGATTTATGAGAGAACGAGATATTCAGAATTCTACATCTTCACATGTTGGAACTGAAAGATCAAACCAAAGGCCAAACTCAGCAAGAGACAGCAAAAGGGAGAGCAGACGAAAGACAACTGCTCAGCCATCAAATGATGAGTCTGATACTCACTCAGATAAACAAGAAATCATGGACAGTAAGAAAGATAATTATGATGAACTCTTAAAAAGGCTAGAAAAACCGGCGCGTAGTGTCAGTTTGTCTAAAACAAGCTCTAAGACTTCGAACACAGACCTAAGGTCATCAGATCACAGACAGAGAGAAGAAACAAATGCAAGAATTCTCGACAAGCCAGATGGAAGAAATGTTGCGCCGTCTCAGGAAGGCTCATCTTTGTTGTTTGGTGATGGAACAGCGAGAGCAAAAAACAAGCGAAGACTTAATAGTTCTATGGGGGGACCTGTTGTTAGTTCTGGACTTGTGGCGGTCAGAAAAGATGCAAGAACTCGTCATAGCACCGGAAGGGTTAACGATGGTTTCAGCAGCAAACGTGTTGGAAGTTTACTTGATTACGACGACGGGCCGAAAAAAGAAGAAGTGGACATGCAAAGTAAAAATCAGGAGAAAGCGGACCACAATGTGGATTTACATTCTAGTGGTAATGATTTCCCCTTGGATCAGATGGGCCATCATCCGCATCACCAGACAGAGGTTTCAACAACGCGTACAAAAATACCCAGATCTCAGACGAATTCGTCGAGAAACCAGCTGGTTCCTTCAAATTCTCGGTCACAAAAGGTTAAGAATAGCGATCTGGTGTTTGAGGATATCGATGATGATTTTGATCAAGAACTTGCACAGCTGTCATTAGGTCCAAGAAAGATTGCTGCAGCTGATTTAGAAAGTAAACCTATATCGCTGGAAACGGCAATGGGATTGAAAACTCTAATATTCGGCAACGGAAAGACCAGTTTTGCGCCAGAATGGAGAAAGCAAGCCTTTTCGTTCTGCGACTTGTATGGGCTGGAGTATGGTATTGTACAGCTGAAGGGTGGACCTTGTGGTGTACTCGCTTCTGTCCAAGGATTCGTGCTCAAACATTTGTTATTTGGAGTTAACAAAGGCGACGTCAAAAAGAAACTTCACCCATCGTCACGTGAACGAACCAAAGCTTTGGCGTCTGCTATCAGTGAAATACTTTGGCGAGCTGGAGACAACAAAAGGGCCACGGTGGCCTTGGCTACTGGTGGCTCTAATGTTTTTGGCGCAGGCAGATACAAACCAGACCAGCTAACAGAGACGCTTGTCTTATACGCCTTCAAGACTTCAGAAAGTCTTCAGAACTTTATTTCTCAAAATATAACACAGTTTGAATCTGACACAAGCAGCGGGTGCATTTTGCTCTTGTATTCCGTGATACTATCAAGATCAATTGAGAGGGTGAGATCGGATATGGACGAACCAAACGGAACGCTGATGGGTGCGCACGGTTACTGCACGCAGGAAATGGTGAATTTACTTCTCACTGGCAAAGCTGTCTCTAACACGTTCGACAACGTAATGGAGATCGACACTGGCGGAGTGGAAAAGAATATTTTCAAGGGGCTTGAAAAGCAAAGTGAGATTGGACTTCTGTCGTTGTTTGAACACTACAAATCATGCGAGGTGGGAATGAACTTCAAGAACCCCAAGTTTCCAGTCTGGGTCATTTGTAGCGAGAGCCATTTCAGTATTCTGTTCTCTGCTGAAAGAAATCTTCTAGATGACTTGGGATCTGTGAAGAAGTTTGATCTGTACTACTATGATGGGCTGGCGCGACAGGACGAAGAACTTAGATTAACAGTTGATACAGCACGAGAGTGTCCAGATTACAAGGATACCGATCTTGTGCCGCCCTTGGAACACTGCATCAGAACAAGGTGGAAGAATGCTGTCGTGGATTGGAATGGTTCGGAGCCCATCTTGTGA

Transcript

FUN_009817-T1

TTTGTAGTCGAACAAGTTGCCACACAAATGCCGTAAGATAGTGTCTTGTTTTTATTTGTCGATATAGTTTTAAAAACAGAAAACCTGTGAAGCAGAATATTCACAGTGAGTAGGGGAATTCCTTGAAAAACGATTGCTAAAGAAAGAAAAAACTGCCTTTGTACGACCGAGGGAAATATTGTTGGCAATTTCTTGATGAGCTGCTTTCAAGTTCAAATAAGAAAAAAGTGTCATTTTGTCAGTCGACAACAATTTGTGCATTTCACTCTGTTATGGAGTCACTTTGGATTAACGAGGGAGAACACAGTTGAAGAAAGAGAAGCCGAGAGATTTTGTTAGTTGGAGCCAAGAAACAAAAATGGCAGATGCTATTATCGTTGCACTGACGGCTTCTCTTGTTAGGGAATATTTAAGTAGAAAGGGGCTGAAGTCTACACTTCAAACCCTTGACAAAGAGCTTCCACGAACAGAGGAAAGCATCAGCAATCGTGCACAGCTGGCCAAAGAAATGCACATTGAAAAGCTCATGAAGAAAAACAAGGAGCTCCCAGAACCATTTCGTACCATGTTAGAAGTTATTGTTAGATTTATGAGAGAACGAGATATTCAGAATTCTACATCTTCACATGTTGGAACTGAAAGATCAAACCAAAGGCCAAACTCAGCAAGAGACAGCAAAAGGGAGAGCAGACGAAAGACAACTGCTCAGCCATCAAATGATGAGTCTGATACTCACTCAGATAAACAAGAAATCATGGACAGTAAGAAAGATAATTATGATGAACTCTTAAAAAGGCTAGAAAAACCGGCGCGTAGTGTCAGTTTGTCTAAAACAAGCTCTAAGACTTCGAACACAGACCTAAGGTCATCAGATCACAGACAGAGAGAAGAAACAAATGCAAGAATTCTCGACAAGCCAGATGGAAGAAATGTTGCGCCGTCTCAGGAAGGCTCATCTTTGTTGTTTGGTGATGGAACAGCGAGAGCAAAAAACAAGCGAAGACTTAATAGTTCTATGGGGGGACCTGTTGTTAGTTCTGGACTTGTGGCGGTCAGAAAAGATGCAAGAACTCGTCATAGCACCGGAAGGGTTAACGATGGTTTCAGCAGCAAACGTGTTGGAAGTTTACTTGATTACGACGACGGGCCGAAAAAAGAAGAAGTGGACATGCAAAGTAAAAATCAGGAGAAAGCGGACCACAATGTGGATTTACATTCTAGTGGTAATGATTTCCCCTTGGATCAGATGGGCCATCATCCGCATCACCAGACAGAGGTTTCAACAACGCGTACAAAAATACCCAGATCTCAGACGAATTCGTCGAGAAACCAGCTGGTTCCTTCAAATTCTCGGTCACAAAAGGTTAAGAATAGCGATCTGGTGTTTGAGGATATCGATGATGATTTTGATCAAGAACTTGCACAGCTGTCATTAGGTCCAAGAAAGATTGCTGCAGCTGATTTAGAAAGTAAACCTATATCGCTGGAAACGGCAATGGGATTGAAAACTCTAATATTCGGCAACGGAAAGACCAGTTTTGCGCCAGAATGGAGAAAGCAAGCCTTTTCGTTCTGCGACTTGTATGGGCTGGAGTATGGTATTGTACAGCTGAAGGGTGGACCTTGTGGTGTACTCGCTTCTGTCCAAGGATTCGTGCTCAAACATTTGTTATTTGGAGTTAACAAAGGCGACGTCAAAAAGAAACTTCACCCATCGTCACGTGAACGAACCAAAGCTTTGGCGTCTGCTATCAGTGAAATACTTTGGCGAGCTGGAGACAACAAAAGGGCCACGGTGGCCTTGGCTACTGGTGGCTCTAATGTTTTTGGCGCAGGCAGATACAAACCAGACCAGCTAACAGAGACGCTTGTCTTATACGCCTTCAAGACTTCAGAAAGTCTTCAGAACTTTATTTCTCAAAATATAACACAGTTTGAATCTGACACAAGCAGCGGGTGCATTTTGCTCTTGTATTCCGTGATACTATCAAGATCAATTGAGAGGGTGAGATCGGATATGGACGAACCAAACGGAACGCTGATGGGTGCGCACGGTTACTGCACGCAGGAAATGGTGAATTTACTTCTCACTGGCAAAGCTGTCTCTAACACGTTCGACAACGTAATGGAGATCGACACTGGCGGAGTGGAAAAGAATATTTTCAAGGGGCTTGAAAAGCAAAGTGAGATTGGACTTCTGTCGTTGTTTGAACACTACAAATCATGCGAGGTGGGAATGAACTTCAAGAACCCCAAGTTTCCAGTCTGGGTCATTTGTAGCGAGAGCCATTTCAGTATTCTGTTCTCTGCTGAAAGAAATCTTCTAGATGACTTGGGATCTGTGAAGAAGTTTGATCTGTACTACTATGATGGGCTGGCGCGACAGGACGAAGAACTTAGATTAACAGTTGATACAGCACGAGAGTGTCCAGATTACAAGGATACCGATCTTGTGCCGCCCTTGGAACACTGCATCAGAACAAGGTGGAAGAATGCTGTCGTGGATTGGAATGGTTCGGAGCCCATCTTGTGAAGAATTCTACGCCTTATTCTCAATTTCTGTGGAATCGATTCAGGCGGAGAAAGTAAATAACGGAGCAGCGCAAAATTATCCTTATCTCCGTTTGTCATTAGAAAACTATTGTGTTCTTTATATTTAATATTTCAACTAAAATGAATGTACAAATGGGGCATTATAAGTTTGTACATTGCGATTCGTTATTCAACTGTTATTTTAACGAGCTTGTATGTTACGTTATCTCTTATGGCCGTGAAGGAGGCGAAAGTTGCTAAGGAAACACGTTAACGTTACTTAGGGTTCGTTATTATTCAAGGTCTTAAAGTTATTAGTATAAATTTACTCGTAGTCTATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UQI9	Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 OS=Mus musculus OX=10090 GN=Mindy4 PE=1 SV=1
Q0VA42	Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 OS=Xenopus tropicalis OX=8364 GN=mindy4 PE=2 SV=1
A1A4L4	Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 OS=Bos taurus OX=9913 GN=MINDY4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001667 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13898 all species →	MINDY-3_4_CD	Deubiquitinating enzyme MINDY-3/4, conserved domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR025257 all species →	Domain	Deubiquitinating enzyme MINDY-3/4, conserved domain	Interproscan
IPR039785 all species →	Family	Deubiquitinating enzyme MINDY-3/4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12473 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0071108 all species →	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:1990380 all species →	Molecular Function	K48-linked deubiquitinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22647	MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.