Gene detail

Detailed information of FUN_009839-T2 in Dendrogyra cylindrus

Genomic Location: contig_13:4266764...4284968
NR annotation: XP_027039744.1, transforming acidic coiled-coil-containing protein 3-like [Pocillopora damicornis]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_009839-T2

GCAGTGTTGTTCCTTAGTATAATATAAAGCTACATGACTAGTTTTAAGCAGGGTTCTGGGCTTCTTGGTCGAAGATGGCAACAGATGGATTTCCAGAAACCCTGCGAGGGACAAGTGACATGGCCCATTGGGTAGTGACAGCCCGTAGGATGAAATCACGACAAAAGACATCCTGCCTTGCCAAAACTAGAACAGTAATTTCAAGCAGCACAAAGTACAATAAAACACTGACATGGGACCTTTTTTCATTCAGACAGGTGACATGGGATCCACCCATCTCAGCCCTCTGAGATGTGGGTTGTGTGCCAGTTGAAGGCTGTACTTAATTATACCTTACTTATGCTTTGTAGATAATTTGATGGATAGTAATGAAGACATTGACAAACTCCTGGCTCCACATGAAAATGACACTCTAGATGAAGATGATGTGCTGTCAACAGGAAATGCAAGAACTGACAACTTGTTAAAGGAAATAACTAGCGACGAGCGCTCTTACAAATCTGCAGAACTGTTTTCTGTCAATCCCTCTGATCTTGAAAATGAGTTCCAAGAGGGTAAAGCATTAGAAGATATAGTCAGCTGTGAAAAGACCGATGAAGTTCAGGACTTGTTCGAAAGGGATGCTGAAAATCAACAAGAGGAAGATGATCAGTTTGGAAATGATGCATTTAAGCCGGCTAGTGAAGCTATGTGGGAACTTGATTATCTTGAGCAGTGTGGCAACAGCAATAAAGAATTTGAAATGtcAGCCCTGGCCCGTCAGTCTTTGTATGTTAAGTTTGATCCACTTGTGAAAGGGGGAAGTCCTCAAAGCCCAGCAGTGAAGAGCAACATGGGTGTGAGAGACATAGCTCCACAGAAGCCGCTAAGCATGGGTGAAAACCTTCTGTTGATGGATTCTCCCGCACCTCGCGCAAGGACTGGACGCAATGCCAACAGGGACCACGCATTGTTAGAGCAGGCTGACAGCCCATGTGGAGTGGACAAGTTGCTGAATTTCTCTCCTTCCAAACTACAAAATGTAAACGAGgggacAAAAGCCGAAATcataaaagaagaagaagatatTATTGTGGAAAACACTGACAACGTTGTGGAAACAGTGTCTGCGCCAGAATTAAGCAACATTGAGGTGAAGGAGGAAGAACCGCCTCGCGagaagGCGCTGTTATATAGCAAGGAGGATTTAGATGAAGCCGTCAAGAAAGAGACGGAAGCTCTCCGCAAGCAGGCGCTGTTTGATAGCAAGGAAGAGTTTGCCGCGGCAGTGAGAAAAGAGACAGATGCTTTGCGTCAACAGATGAAAGAAGAGGCTACAATTCGTGATATGGAAAGTAAAGAACTCACGGAAAGGAATCAACAGCTTAGGAGAGAAACAGGAGAATTAAGGGTTGTTATGCAAGAATACGAAAAGACCATTGCAGACATGATAGaaaaaaatcagaaatcaCAGGACCAGTATAACCATTCGACTTCAGAAGTAGCGAAAGAAAGAGACCAGCTGCAAGCTGACTTGACCGCAGTAGAGACGGCTTTCTCAGACCTTCACAGAAGATACGAGAAGCTCAAAGGAGTAGTGGAGAACTTTAAAAAGAACGAAGAAATACTAAAGAAAGCAACAAGCGATTACCAAGAAAAACTCAAAAGATCCGAAGAAAAATACCGTTTGTTAAAGAAACATGCCGAAGAGAAAATCGAGAGCGCAAATATTGaaataactcgagtacggaaatcCAACGAATCAGAGATAGCTGTAATGAAGGCCGCACTGAAGAAAGAACAAACAAAGTCAGCCAGTTTAGAAATGAGTCTTCAACAGAAGGTATCCGAAAATGCCGAACTTACGGCGATATGCGACGAGCTTATCAACAAGATGGGAGGTCAACGATCGTAACATCGCAAACGAGTGGTTTTGTACTACGGGTGTTCGCACATCTCCTCCCCCGGTTCACCTTTATTCACACACGGAGAGTTGTGAAGATCATTGTATTATATTGTAGTTATGTTTCCGGGGGGCGGCGGGTAGCTGCGAGCTGTGCTGGCGAGAGAAGAGACTTCATATGTGAAGCTGACATACTTGTCGACGCGAGAGTTCCATGTTCTCACTAATGTAAATTCAGCTAAGGCGTAATTATAGCTCGTCTTGTTTAAGACTGTTTATATAGTAGAGGTATTTAAGGCCTACTTAAGCTCTGAAAAATGATTTATTATTTAACTTTAAATGAAGTTCATCTGGATTGCTCTTTGCCGTTAAGACACTGCGTCTTTGGCGCAAAACTTCGCCAACAGAGCGGTTCGCAATGCATCTTAATCTTCCCTTTATTCTTCGCTATCGTTGTTTCGTTTTAGTTTTTTGTCTGCTTTAGAGTTTTCTACCTCCGTACTATCACCTTGAGATTTCTTTCGATTTAGAGGCTACTTTAATTTTAGATAATCGTGATCCAGTTGGAGCAAAAACTATTAAGTAAGTCATAGAAATGGTAACGAGCCCGCAAGTGAAACGAAAATTAATTCAATactggggcccgtttctcgaaagccccgggAACTTTTCGGtcccgcaaagccatttttagtcaTCTGTCCCTTAAAAAGAACGAAGTGTAAAGTCCTcaactttgtatgaagggaacctctgttcatattaaaaatatcatggaataaggcagctctgtaatcataaggtttgagattctGCTAtggtgcgaaaacttttcgggaccttcgagaaacagGCCCCAGGCCCCTTTCCGTTCGATGGCGTTGTTTCTGTTCACATTTCTTATCGAAGCCtatttgtaaaaagaaaaatctgaagaagaaaaaatattaaatatccATCTGAATGTGTTCGAAATAagaattttgctttggcttttcCCAAGTTCATAAGCATTTTTGTTAACTCACTTCTCGACCAGTGTTGCAGTTAATCGTATTTTTTCCCGCTTCGATTTTGCCGTGGTCTGTGGAAAAGATATTTAAGTTGGCATAGGAATTGTTTTACATAAGGTGTTGTGCCCATTTACACAGAAGCAACATAAGTATCAGAGATaagcaaattattaaaatacaAGAAACCCTTGATGCTGTAGCTAGTAAGGTTTTTAAATAATCGGGCACTGTTGCTATAATTATTGGTAAATATGAAGCCTTTTCATAGCCCGAATTTTCACACTTGGTCAGTGGTAATGGAAACGTCGAAGTTTGAATGGGCTGAGACTGAAATTTAGCCTGACATTTTCAAGGCTCTCACATCGTGGGTAACAGAGGAAGAGCGAGAATATCTTCCTTCGTACGCCCTTCCTctcgtggaaaaaaaaaaagttacaaaGAAGATGGGCTTATCGAGTTGTTCCCACACTTTGAGATCCCGGAAAAGCCTCATCGATGTGTTCATTTCTATTTTTCTAGGTTGTTTAATAATAAACAGTGGTTGTTAAATGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6Y685	Transforming acidic coiled-coil-containing protein 1 OS=Mus musculus OX=10090 GN=Tacc1 PE=1 SV=1
O75410	Transforming acidic coiled-coil-containing protein 1 OS=Homo sapiens OX=9606 GN=TACC1 PE=1 SV=2
O95359	Transforming acidic coiled-coil-containing protein 2 OS=Homo sapiens OX=9606 GN=TACC2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002698 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05010 all species →	TACC_C	Transforming acidic coiled-coil-containing protein (TACC), C-terminal	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007707 all species →	Domain	Transforming acidic coiled-coil-containing protein, C-terminal	Interproscan
IPR039915 all species →	Family	TACC family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13924 all species →	TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 1/2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0008283 all species →	Biological Process	cell population proliferation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14281	TACC1; transforming acidic coiled-coil-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.