Gene detail

Detailed information of FUN_009847-T1 in Dendrogyra cylindrus

Genomic Location: contig_13:4373388...4386069
NR annotation: CAH3016470.1, unnamed protein product [Porites evermanni]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9WU56	Pseudouridylate synthase 1 homolog OS=Mus musculus OX=10090 GN=Pus1 PE=1 SV=2
Q4KM92	Pseudouridylate synthase 1 homolog OS=Rattus norvegicus OX=10116 GN=Pus1 PE=1 SV=2
Q9Y606	Pseudouridylate synthase 1 homolog OS=Homo sapiens OX=9606 GN=PUS1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01416	PseudoU_synth_1	tRNA pseudouridine synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020097	Domain	Pseudouridine synthase I, TruA, alpha/beta domain	Interproscan
IPR001406	Family	Pseudouridine synthase I, TruA	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR041708	Family	Pseudouridine synthase PUS1/ PUS2-like	Interproscan
IPR020095	Homologous_superfamily	Pseudouridine synthase I, TruA, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11142	PSEUDOURIDYLATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0031119	Biological Process	tRNA pseudouridine synthesis	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06173	truA, PUS1; tRNA pseudouridine38-40 synthase	EC:5.4.99.12	Transfer RNA biogenesis	ko03016	deepkoala