Detailed information of FUN_009983-T1 in Siderastrea siderea

Genomic Location: contig_7:15071083...15075093
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_009983-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR027421
all species →		Homologous_superfamilyDNA polymerase lambda lyase domain superfamilyInterproscan
IPR033309
all species →		FamilyCrossover junction endonuclease Mus81Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13451
all species →		CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000712
all species →		Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0000727
all species →		Biological Processdouble-strand break repair via break-induced replicationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0006308
all species →		Biological ProcessDNA catabolic processInterproscan
GO:0008821
all species →		Molecular Functioncrossover junction DNA endonuclease activityInterproscan
GO:0031573
all species →		Biological Processmitotic intra-S DNA damage checkpoint signalingInterproscan
GO:0048257
all species →		Molecular Function3'-flap endonuclease activityInterproscan
GO:0048476
all species →		Cellular ComponentHolliday junction resolvase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_009983-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_009983-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
43.0Max TPM
1.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 25.68 43.01
unannotated 1 1 11.01 11.01
live coral tissue/skeleton 1 1 17.65 17.65

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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