Gene detail

Detailed information of FUN_009993-T1 in Siderastrea siderea

Genomic Location: contig_7:15161711...15176606
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_009993-T1

TAGGAAAGATGAGCCTGCATATAGGTTACACTACGGAATGATTGAGAATAACAGACCTAGCATGGTTTTagccctgggtgccagaggttaatttttttctctctgaATTTTGGAGGTGGTGGGGAGAATTTAGGGGAATGGCCTGGGAGCagtgaaagaaaattaattgtACCCTTCACCCTGGATTTATCAAGCACGATTCTGTAACCAGACGCTTGTGTACATAAACAATATTTAGGAAGCATCTTTGCTAAGGCTGGAGGGCTCATGACTCTGGTTCCTGGTGGATGGGGTACAGTGGTGGCTAGACAAAACCCTGGGACAAAAGAGGGGGTAAATGTGTCACCGAGGGAATTAATTTGTCTTTATGAAATCATTAAAAAAGTTTTACTTTTCAAATTCCCCTCCTTGCGCCCTGTCAAGTACAGTGTACGTATTGATGGTATGCATTGGAAAACTGTCAAGTTTGGCGAAAAAAAGTACTGTGATCAGTCATCCGGCATTGCCAACCcaaagaccctgggaacaaggttgtgcttgttcctagtactcctcggctgCCATTCAAGGTTGAGGAAAAACGGTGATTGTATGAGACACTTTTTAGACCTGAATCTAGAAGTTTTTTTCAACCATGTAGTTAATCTAGAGGAAAAAAGTTGCAAATGTTTCGTGATGCACAACAAGAAGTTGCTGTGCTGGGAGCCGGCTTGATGGGGACATGCATCGCAGGTATATTAAAACCCCAAACATATGAGCTTATAAATATATAACTCAAGTTAAGCTTAAATGTTGTTAGCTTAATTAAGTCTTGTCTCCTTTTTACAAAACGGTGAATTCTATCGAAGGTTAAGCTTAACTGAGAGATACAGGATGAAGAGAATTAGCGAGCAAAGCAAATCAACGGAATTAGGGAGGGATTAGAGCCTGTGGGCAGATTGAGTATGTCTGGATTCCATGCAGGCACTACTCAAAGGTGATACAGCGTTATATAACAAAATTAGAATTGTTGCTATTAGAATTATTGATATTTTGTATTTTGGTATTATATTGATATTCTGATATTGCAGACCTGGAAGGTGCTGATTAATTAAGGTGTGGGTAGTGACAGAATTAAGCTTGTCAAAATATTACGAAAAAAGTGATATTTTGTTATTATGCCATTTGAAAACCAATGGGGAATAAGACTGTACCAGTTAAAATACCTGATAAGACATGATACATGTAAGAGTAAGTAAGAGCAGGGACTGcacgaggggtgggctgagggggctttagtccccccactttttggtaccattaaaaaaataatgaaaaagttcgaaaaatcaTTAGTCAGcgattagtttcagggttaaccagtacttggttttccccagttagatctaattttcaCGTGGACCAAACAGAAATGGAATAGAAACGGTATACTCTACAAAAATTCAAATAGCCCGGCTCTCATCTGGCTTgattagttgaaactcacgtACGCTCTAGGGAactctatcttgaagagtttgaacctccTCAGATTTTAATTACCTTCGATGGAAGTTGACACTCTCGCtatcgtttggcctctaactctcgtgaactctcattgactcccTTCTGCTTTTACAGAGTTTGAACTGTTGTCGACTCTTGTTTTTGTCTGGCCCGGGCAGTACGAActgtagtctgtctccagataggattatgGGCAACAGTGTGTAAACTTTGTAATTAGGATAGCTGCCGAAAGATCTCCTTCGTTTctaacgatgacaaataaggTAGTTAGCAGTCAGGACATACTGACAGACTGACTTTAGTGAAATAATTATATAGttcatgatactcagctcagctttttcagttggccttattctgtaatgataacaggtttgcttgtacaagttttgagaaaaatgtttttgaatgtGAAATCTTAAAAGCGAATATGTCAAGGTTTGCACTTTGCCGGATATggcttaaaatgtgtgtagagATGAAAGAAGAGGCTCAGGTGCATGACTGTAGGACTACCCTGGTTATTCCTAACAGAATATCCAGAGTACCCACTCCATAGAAGAATGCAATTTTTCCTATTCTGAgtaaaccaaaacattccgaCCGAATTCCatccaaactgagaaaacatgaactgtatattgtcttctattccgtattaggccaccaaaacgtACCCTAAGTATCGACATCATTAATCACTGGTAGGTGGAAGACTTTGATACCCTTAGTATAGCTTTGATCCTTTACTTAAGGGTCTATACAATACAATCAATTCAACTACAATCAATTTATATTGCTTGGTCCATGTGTTTCCATGTTCCAATTTGAATTGGGCGTGTTTTATATGTTGGGTATAAACTGACAGCTTTCAACACATGTGGCTGCCCAAGATGCAGTGTTAGTCActaaaaagacagaaaatttCGTGTAAGGCTGTCATCCCCTCACCCTCCGATCGAGTTAGCCgccccactttaaaataggccgcgcggtccctgaaGAGATGCTTTACACatccaaaacaaaattttgttttggatGTATACAGCATCTGTTCAACTAATGTTACATTTATTTATGCTTGTTGTAAGACTGCCTGCAAAGGAAAAATCAAGACTGGTTTCTTTGAACAGTCATtacctttaaaaaaaactgttggaCATGGGATGAGTGTGAACTTGTGTGGCTTTTAATTAGATCTGAAGATAATATGGAGACAACTGATAGTGTGGTTGTTGAAAAACAAGTCctgtcTTGCATTACTTGTACATTTCTTCATGTCTTGCGTGACTTAAGTTATGCCAGATGGTGAAGTGTGGAATCAAAAGtactttttgctttttttaggCAAATTATACGTTTGGCTTCAAATTATGTCCTGATTTTGgccttcaataaataaatatgaatgatgagtTTTGCCTTAGCAGGGGCAGATTGCTTCAGTCCCATTACATTTTTAAACATCTGTAGCAAAATCTTGAGAAAATGTAAGCAGGAAACCATTTTCTAAATATATTGTTGCCTTTAAAATGTATCACAAATCTTATAATCTGATTGTGGAAACTGTCATGAAACTTAAAGGTTCTTGTGTGACATCATGCATGATGAATGTGGCAAAACTGTAgacaaataaatattaaaaatagaGTGACAACGTGGGCATGACAAAGGGATGAGCATCTAAGTTGTGTAGAtcttttcttgtttgtcttgatttttactgacatgGAATAGCTGATATATGGTATGCATTTAGTAGCGATCCCCAGAAAGTAGCGATAGAAACAGTCGTGTAAATCGGAACATAACAAAGTCATGACTTTGAATTGACCAGTCATTACATACCAACTGGTACATTACAATGTTCTAATTACTATCACCCAAACATGTTCATGAGGGGTTTGGTTATGCTCTAGGTGAGCTTGCATATCATGGCCATCGGGTGAAGGTGTATGACCGAAGTAGCCAAGCACTAGAACGAGCCAATAATGTGCTAGAAGAACATAAAGACAAGCTGAGGCGGGAGGAGCTGATGGTCACTCACACCTTTGTGGGTACAGTTACCTTTACTGAGGACCTTGAAAATGCTGTTAGAAATGCAAGCTTTATCTTTGAAGCTGTTTTTGAAGACCTAAATGTGAAACAAAATCTATTTGAAAGAGTATCAAGAATATGTAAAAAAGAAGCTATTATTTCTACCAACACCATTCAACTTGATGTCAGTGAAATTGCATCGAAGGCCAGTAACCCTGAGCGGTGTATGGGCATCAGATTTCTTTATCCAGTATATTGTATTGCTGAAGTTGAGATAACCCTTGCCAAGCAAACTAGTCAGGATTCTATACAGAAAGCACGGCAGTTCTTAGAGGGAATTGGTAAAACACTCTTCTTTCGATCTGGAAACACACCCCTTGTTCTAAGTCACGCACAAgttgaagaaagaaagagagTTCAGAGACAGAGGCTCCGTGCTATGTTACAGGATGGTCATGCCCCTCCATTACAGGTGCCACACTTTGGTGCGGGACATGGAGGTTTGCATTCATCACACAGCCATCAGGACCATAACCTGGATAATGCTGCACCACTGCAACAACAACATCAGGAGGGAGCAAGTGAAGCAGCAAGCCCTCAGAATGAGTGTGTGGTATGTATGGACAGTGCAAGAGACAGCCTGTTGGTTCCATGCCATCATTTGTGTGTTTGTATGGCGTGTGCGAACTCTCTGAAAACAGATCATGGACTCTGCCCAGTCTGCCGGCAAAACATCACTGGAGTTATACGTGTGTACCAGCCTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075 all species →	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_009993-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.