Gene detail

Detailed information of FUN_010176-T1 in Dendrogyra cylindrus

Genomic Location: contig_14:2042175...2047784
NR annotation: XP_022798813.1, glycine-rich RNA-binding, abscisic acid-inducible protein-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_010176-T1

GTGCTAAGCAGAGTGCTACTATTCAGGCTAAACCAAGGGCAAGGTGCACTATGCTTACGTCAGTTGGTTATATGGTTATGCTAAAAATTCTTTTTCTTCATGCAGCCAAAGTAATAAATGACCGGGAAACTGGAAGATCAAGAGGCTTTGGTTTTGTAACTTTATGTTCTTCAGAAGATGTTGAAAGAGCACTGAACAAGGGTGATAACTTGGAGCTGGATGGCCGGcaaattaaaatatcgaaagCCAAGTCCCGTGaaggaggtggtggtggtggtggtggtggtggaggcaGACGAGGAGGCTTCAGAGGTGGCAGAGGAGGGGGAGGAAGATATAGTGGAGGAGGATACGGAGGGGGAGGAGGGTACGGTGGAGACAGATACAGTGGAGACAGATacagtggaggaggaggaggaggatacAGTGGTGGAGGAGGATACAGCAGCGGTGGAGGAGGAGGATATGGAGGATCTGGAGGTGGTTATGGCAGTAGATATGGAGGAGACAATTATTCTGGTGGCCAAAGTTACAACAAAGGTAAAGGCCAAGCATGTAGTGTATTTTGTGTAGTGTAAAGTGTCTGTGTTGTGAAAGAGCTGATAAATGTATAATTCTTAATCGTCGCAATCCTCTGATTGTGAAACATGGCTGCTTCAATTTCTGTGTGCAGTAATTTCATGGCACAAGCTTGACAGCAAAAAGTGTGATGCCATGTTTTATGTATAATCAAGATCtaattatacatgtacactgtggatttaaatttatttgcatCCATTTTGATGAATAATCTGTGTTTTTGGAGTGCAAGGATGCTTCTGAATGGCATACATACACTGCATGACACAAGCATGTTATTTGGAAATGCTCATGTTTACCACCAACATGTATGCCAAGTGTTTTGAGAGATCTCACGAGAAATCTGACCAATGGGCCTCTtgctgttaaaaaaataattttgaactcTGTATGCCCGTGTTAGAGCATGCAGTGTGCCCAATTCCCATATAAACTATTCATGTAACAAGCTCTTTACACACAAATCTCCAGCTCTTGATAACAGTGAAAATACTGTCTCTCTTAACCACTTGCTACCAAGTTTTAAAATGATCAGGCCTACATTGATTTAATCTCCCACTGTTCAATGGGAAGGGTATGATTCTGTTTACTTGATTTCTCCTAACAATTCAATTTTGTTCTGTTTGTCCATTCTCACAAAAGGCCGTGACTGGTAATGATCTGTACTGCTCCATGATTCGACCGTGTTCCTGTCAGTCTGTTATGCATTGATGAGCTGAGGTGATAGAAACAAGAGATAAAAAATTCAGTGTGCCGTCCTGAAACTTGATGAATGATAAACCTCAGCTTATGATGTTCGGTGCTCTGAAGTTTCCTGTTATGTTGATCCATGTGCTCTGAAAACCTCAGCTTATGATGTTTGGCTCTCTGATGTTGCAGTCCGTGACCATGTGCTATGCAGAAATGGCTTACTATATAGAGTCAATCCATAATTTTCCGTTGATATTGCCTAGAACCTGTATAGCCCAAAGCATTTAGTTCCAAATGCTTTTTTTATATAtagatttgtttgttttaacaACGTTGTTGGTTTGTCTATTCAACCAAGTTGAATATCCGATTACTGTACTGCATTAAAAGAAAACGTTTTGCTGTGTCCGTGCAAGTGATGGAAACTGGTACATTTAGGCAACAGTGGGTCAGGACATTTTGACAGAGAGATAATAATCATTAAAAACAATCTGATCTGTCAAATTCACAGACTTGCTGTTGCAACTTCAACCTTTTGTAGTGGTTTGCATCTGATGTTATCAAAATCGTTTAATTGAAACTGTTTGAAGCTTTTATTACGTCCTTAACAACAATGACAATGTCCATGCAAATTTTCAAGTCGCCAAACTCCTTTCTCGTGAAAAGGTAGCATTTTGAAATGTGTGTGCGCCCAACCATGCTTTTCAGATGGCACTTGCTAAACCTGATGTTTTGTCAATTGGTGCCCGACCATGCTTTTGAGATGGCACTTGGTAAACCTGATGTTTTGTCAATTGGCTTTATGCAAATAATAAGTTTGGAAAGCTTGCTATATTTAAAGACCTTCAGGTGTTCATTTTGGCTGCTATGTAGCTGATGTGTACAAAGTTGTTATTTGGAAAATATTTGTTCTTTATGAGCAACTCTTTAACCTTCAAGATTATTCAAGTTTTTGTTTGACTTGCAAATCGACAAATGAAGTTTAAAAGGAAGCAACAAATAATATTATGTCACAGGGTTCGTACAGGTCATGAAAAATCTGGAAAGTCGTCATGGAATTTAagcatttcattttccaggcctagAAAATCATGGAATTTAAATGTGGGTGATGAAAAGTCATGGAAAAATgatgtttattaaaaagtacaatatAATTAAGATTTTTTGcgaagaaaatggtaaaaacgtacccaaaatgaaaggtgatttccaagaaaatggtcaaattttggtcatggaaaaggtcatggaatTCCAAAGGCTCAAAAGAGTACAAGTCCTGTGTCATTGTAAACCACCTGTTGCAGCTTTTTAGTAAATACCTTGGAAGACCAGAATTTTAAATGCCTCTTGGCTTCCTGTGAAAACATTGTGAGGCAAGTCTTCGTTTTCTTTTAGTATCACTTGAGGTGTTGTTCTGAGGAACTTACCCTGGATGGTATGCACTGACATTTATTTGGGAATCCCCCTTAGGGGACAACTTACACTTGGGGTTTTCTGGAAAAAGTAACAAAAAACTTGATTTATATAGTGTGAATAATTCCTTGGTAGGAGACCAT

Protein

Uniprot

Uniprot term	Description
Q05966	Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1
Q43349	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2
Q9ZUU4	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051106	Family	RNA-binding and splicing regulatory protein	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48028	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan