Gene detail

Detailed information of FUN_010332-T1 in Colpophyllia natans

Genomic Location: contig_14:1907429...1913439
NR annotation: KAJ7357835.1, Glycoprotein hormone beta-5, partial [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_010332-T1

GAGGGAGCACCAGAGTATCGTATGCCAAAGGCTGGGTCACATGTGAGGGCAACGAGTATCGGATAACAAAGCGCGCTTTTCGGTTTCTAGTCAGCAATATATTCGTTAGAGTACGCCACGACCTCCGTATTTTCGACGCTCCCCGACCTGGTAAATACTGTTTTCAGAACTGAGCGGTGTTCTAGCTTTCTCAGCATAGCAGGATTGCTTGTTTGCTCCTTAATCGACCATCCTTGCGAGTTCCAAAGATGTCTAGATTCTCTTCATTTTGTTGCTGTTTCCTTCTTCTTGTCTTGGTCCACTCAACCCAGTCTAATAACCCGTTTGACCAGTTTGGTGTCTACTGCAAACCGGAAATATTCAGTCAGCGAGTCAGCAAAACAGGTTGTGATTCGAAGTACATCCGAGTGAAAGCCTGTCTTGGCACATGCGCGTCATACGCTTATCCGCTGGACCGCCCACCTTACTTCAAGAAATTCTGCGAATGCTGCAAGCCTTCAGCTACAAGGTGGAAGGTGTTCAATCTACCAAACTGTGCCTCAGGGATCTCCCCCTTAGTACAACTGGAATCTGCCGTGAACTGCAAGTGTTCTGCTTGCACGTGAAAAGAACAAAAAGTAACAGAATTAGAGACAGATAACTTGTTAAGTAGCCTTTGATAAAAAGTGAGTCCTTATATTCAAATAGAATTTATTCAAAGCATGATACGacaaaatttcattttagtGTCACGCAATATTTGTGTCACACCTTGAAGACCGTCAGTTAAGACACCTAgtgtaaattaaagtaatttaacAAATCGAAATGCTCAGACTTGTTTAAGATGTAGGTTGATTTTGGGTATAAACGACATCGTGGCAGAGAGAGAGGTGAATATAAGCGAATAGTTCACCAATCAAATTAACGGATCCGTAAAACAACCGACAACCAACCGACCGgttagttggtagagcgtcggactaccgtgcgggaggtctcgggttcgagccccagagcGGACAACACTCGGGGTCTTAAAATattaactgaggagaatgtgctgcctttgcaatgacatttgcaaatggttagatattctagtgtTCCCGGATAAGTACGATAAACCGtcggccccgtctcctgcatcttcattgttctggttagcaggggactTAAAAAcccccacacactcatcgtaaagagtagggcacggagttcccggtgttgtggtctggtcttgtaaagcgcatttgaaatgcgctatataaattcataagttggtgtgatgtcCAAAAGACTTTACCGACTTAATGTAAATGTGAATGTAAATGTAAACAACGATCAAATTAAACGAATTTacagtaaaccaatcaaattaaCGTATTCACAATGAACAATGTGTGTTTGGGTTCCGATAAAAGGCTATCGTTCGGTCTAAAAGCTCTTTAAAGACTCCTTCTCTCTGGTGGTTAGCCCTTCTTCAAGTTGATCGAAAGttcCAATCATGTCTAGATTGCCTGCAGTTTGTTGCTGTGTCGTGCTTTTAGTCCTGGTCCACTCAAGCAAGTCTAATAACCCGTTTTACCAGTTTCGTGCTTTTTGCAAAGCGGAAGTGGTGCGTCTACGAGTCAACAAAACAGGTTGCGAGTCCCGCTATGTCCGAGTGAAAGCCTGTCTTGGCACATGCATGTCACACACGCGTCCGCTGGACCACCCGCCTTACTTCAAGAAATTCTGTGAATGCTGCAAGGCATCAGTTAAAAGATGGAAGATGTTTAATCTGCCAAATTGCACCTCAGGGATCTCCCCCTTAGTACAAGTGGAATCTGCCGTGAACTGCAAATGCCTGGCTTGCacgtgaaaaagaaattaaaaataaaaatatatgaaaaataaattggaattaaaaattaaaattgacaaaGTGTGCGTCAATAATTTGCTAGGTAGACGGTGACTACAAGTGGGGAATGAATATTCAGCGGTGTCACGCAATGTTTATGTCACGCAAGGCTTGATTAAAGC

Protein

Uniprot

Uniprot term	Description
Q90YC9	Neuroblastoma suppressor of tumorigenicity 1 OS=Gallus gallus OX=9031 GN=NBL1 PE=2 SV=2
O73753	Neuroblastoma suppressor of tumorigenicity 1 OS=Xenopus laevis OX=8355 GN=nbl1 PE=1 SV=1
Q6DF53	Neuroblastoma suppressor of tumorigenicity 1 OS=Xenopus tropicalis OX=8364 GN=nbl1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00007	Cys_knot	Cystine-knot domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR006207	Domain	Cystine knot, C-terminal	Interproscan
IPR006208	Domain	Glycoprotein hormone subunit beta	Interproscan
IPR001545	Family	Gonadotropin, beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11515	GLYCOPROTEIN HORMONE BETA CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005179	Molecular Function	hormone activity	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan