Detailed information of FUN_010369-T1 in Siderastrea siderea

Genomic Location: contig_8:3599055...3612309
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006223 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16046
all species →		FAM76FAM76 proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032017
all species →		FamilyFAM76 proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46176
all species →		LD21662PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016607
all species →		Cellular Componentnuclear speckInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_010369-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_010369-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
63TPM > 0
7Conditions
417.7Max TPM
91.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 11 47.86 212.79
holobiont · low.pH Control.temp 20 16 150.96 408.22
holobiont · control.pH_high.temp 20 12 56.29 417.72
holobiont · control.pH Control.temp 19 18 135.54 404.49
Whole organism 4 4 10.84 15.03
unannotated 1 1 6.54 6.54
live coral tissue/skeleton 1 1 18.25 18.25

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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