Gene detail

Detailed information of FUN_010448-T1 in Colpophyllia natans

Genomic Location: contig_14:3184533...3186782
NR annotation: XP_020605711.1, homeobox protein SIX6-like [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q61321	Homeobox protein SIX4 OS=Mus musculus OX=10090 GN=Six4 PE=1 SV=1
Q6NZ04	Homeobox protein six1b OS=Danio rerio OX=7955 GN=six1b PE=1 SV=1
A1YER0	Homeobox protein SIX1 OS=Gorilla gorilla gorilla OX=9595 GN=SIX1 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF16878	SIX1_SD	Transcriptional regulator, SIX1, N-terminal SD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR031701	Domain	Homeobox protein SIX1, N-terminal SD domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10390	HOMEOBOX PROTEIN SIX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15615	SIX4; homeobox protein SIX4	-	Transcription factors	ko03000	deepkoala