Gene detail

Detailed information of FUN_010613-T1 in Acropora pulchra

Genomic Location: ptg000007l:675448...690435
NR annotation: XP_029198255.2, unconventional myosin-XIX-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_010613-T1

ATGGGGGTCTTAGAGAATTCAACTATTGCCCAAACGACGCGAAAAAGGAGAATGTCGGTTTCATCTGATGATTTTTCTCGCAATAAACATAAGAGGGAAAACGTCCTTGATGTTCGAGCCACTGATAACCTGACGTCTATAAGTCCTTTGAATGAAGACTCAGTTTTAAATGTGATTGAAGCTCGCTTTCAAAGAAAGACTTTCTACTCTTGGGCAGGTGTACCTCTTGTTGGTGTTAATCCATTTGAATATGTGACTGAACTCTATGATGAAGCAATGCTTGAAAAATACAGAACAATCACACCAGATGAAATAAAGGAATATCCTCCCCACATATTTGCTGTTGGTCGGAGAGCTTTTTGTGACCTCGAAAGAAATCTGGACACTAGAAACCAGTCTATCGTCATCAGTGGTGAAAGTGGAGCAGGGAAGACATGGACAACCCGACATTTGATGCGCTTTTTCACAAAAATGGCTGGCACAAGAACAGAGGAGAACAACGCGGTGGACAAGATAGAGAAACGAATTCTCGATTCCAATCCGATTCTCGAGGCTTTTGGAAATGCTCAGACCGTTCGGAATAAAAATAGCAGTCGTTTTGGCAAGTTTATACAACTTGAATATGATAGGTGTCAAAGAATTGTTGGTGCAACGATTAACACTTATCTGTTGGAGAAGACGAGAGTTGTTCACCAAGCTCAAGGGGAAAGAAATTTTCACATTTTTGATCAGATTGCTAAACATGAAGGTCACACGGGAGCACTGAACCATGACGAAACTTCTTTTGGTGAGCTTGAGAAAACAAAGCAAGCCTTGGAGCACGTAGGAATCGGCAATCAACTGCAATCGGAAATATTCAAGGTGCTTAAGGGAATTCTTGAGCTATGTGAAGTTCAATTTCTAGAAGAGAATGACACCAGCAGTATTAATGATGTCGATTTTAGACGTTCCAGCGCTTGTAAGTTGCTGGAAATCGATGCTGAGTCACTTAAACAGTGCCTATGTTCGCGAAGGATAACAACAGGTTTAACTGGAGAACAGGTCATGAAGCCTTGTTTAGAATCTGAATGCGAAGAAAGAAGAGACTGTATGGCGAAATTGATTTACTCCAGGTTGTTCGACTGGATCGTTACGTTTATAAACGCTTCAATCAAAGCACCGCCTGATTCCAAGTACTCATTTATTGGTCTTCTCGACATCTATGGCTTTGAAAATTTCGACTCCAACAGTCTTGAGCAGCTATGTATAAATTACGCCAACGAAAAACTTCAGCAACACTTTGTGTATCATTTCATGAAGGCGCAACAGGAGGAGTATCAGAAGGAGGGTGTAGAATGGTCTTTCCAGGATTTTGTTGATAATCGGCCTTGCTTGGATCTTATTGAAGGAAGGATTAGCATCTTTTCATTAATGAACGAGGAGTGCCGCTTAAAGAGAGAACAAGACGCGAATTCCTTCATCTCTCGACTAGAGACGTCATTGGTGAACAGCAACCACTTTACCTGTCCGAAGTTTAGACACAAAACGCACCAATTCGCCATCAACCACTTTGCGGAAACTGTGTCTTATCAAGCAGATGAATTGCTGAAGAAAAACAAGGACTTCATTCCTCCTGAGGTAATCGAGCTTTTACAAACCAGCAGAAACGTGTTGATTCAAGAACTCTTTCAATTCAAGAACAGCGAGGATCAAATGGAAAATCAAAGATTGGATGGAGACTCAAATGGAAGGAATTACAGAAGACATCGCCAGACTACAGTTACTGTAGTTCAAAAATTTAAGGTGTCTCTTGACAGTCTAATGTCCACCCTGCGCTCCACGAATGTTCACTACATTCGCTGCATTAAACCCAACACCAGATGTCAACCAGGCGTCTTCCATAGAAAACAGGTTATCTCTCAATTAAATGCATGTGGGGTCCTGGAGACCATTCGAATCAGTGCTGCTGGCTATCCCATCAGAATCTCTCACCGCGAATTCCTGAAACGATACAGCCTTACATTGAAACACCTCGACCCAGGGACGCGCAGTCACATGCCTCCACCCCTCGCTCTCTCTCCGAAGAAAGACAATGGGCACTTAAAGGGTACACCAGTTGAACGATTGAAACGTCGTTCTCGTCGACGTCACCGAAGCAGTTACGACCACTCGAGGCAAATCTGTCGGTCGATCGTGGAAGTCGTTGGACTAGACGAAGCTGGCGGGTGCAAAGAAAACAAACAAGAAAGAAATTGCGAAAGGGTCAAAATCGGCAGAACAAAAGTTTTTCTCCAAGAAAGCGCGATGGCAAGACTCGAAGAAGCTCGTAATGAGTGTCTGGTCAAATCGCTGTTGATTATTCAGAGTTGTTGGAGACGCTACAAGAGAAAATTGACAAAGAAAAGAAAGGCTGCCGCCGTGACGATTCAGTCTGTTTGGCGAGGTTGGATGGCAAAAAGGAACTTCCAAGGGAGATTGAAAGCAGCACAAGTTATCCAGCACTACATAAGACGCTATTTAGCTTTGAAGAGAAGCCGAGAGCGATGTCTTGCAAAATTGGTTGGTGATATCTCAGAAAACCAGGTTAATGCTGGCAAACTAAGTCCAGCATTCACAAAAAACAATTGTACTCACTTAAAAAGCGTAGAAAAGCTACAATTTTTGTCGGCGGACGGAGGCAATGGCTGCCAAACCTCTTCGTGGTTTGACCAATTAGACGACAAGAAGAATGGGAAATTCACTCCAACTTGCTCCGTCTTTCTTGGTAGCAAACGATTCACATTAAGTTCAGTGAGAGGTCATCAACGAATTAACCCTCTGGCTGTACTGATGTCAAACTGCAATGCCGCAAAACTAAACTCACAAGGATCGTCTGCAAACAAACAGAACCTTGGAATCCAGACAGTCAACAGGTCATCTGCAATCATATCCCGGCGAGACATCGCGAAGACTCCGGTTGCATTTCACTGTAAGGGAACCCCTCTTCCGCACGCCAACACTAGGCCGCATCAAGGGACAACAAGCAGTCTGGGGTTGGCTGGCATCAGTGAGATGGTAGATTGA

Transcript

FUN_010613-T1

TGTCACAATATAATTTCTCGTTTCTTTTCTTGACCAGCTGTGTTTACTTCGTTATTTGCTAATCACCAAACGAGTAAATAGTAAATGGGGGTCTTAGAGAATTCAACTATTGCCCAAACGACGCGAAAAAGGAGAATGTCGGTTTCATCTGATGATTTTTCTCGCAATAAACATAAGAGGGAAAACGTCCTTGATGTTCGAGCCACTGATAACCTGACGTCTATAAGTCCTTTGAATGAAGACTCAGTTTTAAATGTGATTGAAGCTCGCTTTCAAAGAAAGACTTTCTACTCTTGGGCAGGTGTACCTCTTGTTGGTGTTAATCCATTTGAATATGTGACTGAACTCTATGATGAAGCAATGCTTGAAAAATACAGAACAATCACACCAGATGAAATAAAGGAATATCCTCCCCACATATTTGCTGTTGGTCGGAGAGCTTTTTGTGACCTCGAAAGAAATCTGGACACTAGAAACCAGTCTATCGTCATCAGTGGTGAAAGTGGAGCAGGGAAGACATGGACAACCCGACATTTGATGCGCTTTTTCACAAAAATGGCTGGCACAAGAACAGAGGAGAACAACGCGGTGGACAAGATAGAGAAACGAATTCTCGATTCCAATCCGATTCTCGAGGCTTTTGGAAATGCTCAGACCGTTCGGAATAAAAATAGCAGTCGTTTTGGCAAGTTTATACAACTTGAATATGATAGGTGTCAAAGAATTGTTGGTGCAACGATTAACACTTATCTGTTGGAGAAGACGAGAGTTGTTCACCAAGCTCAAGGGGAAAGAAATTTTCACATTTTTGATCAGATTGCTAAACATGAAGGTCACACGGGAGCACTGAACCATGACGAAACTTCTTTTGGTGAGCTTGAGAAAACAAAGCAAGCCTTGGAGCACGTAGGAATCGGCAATCAACTGCAATCGGAAATATTCAAGGTGCTTAAGGGAATTCTTGAGCTATGTGAAGTTCAATTTCTAGAAGAGAATGACACCAGCAGTATTAATGATGTCGATTTTAGACGTTCCAGCGCTTGTAAGTTGCTGGAAATCGATGCTGAGTCACTTAAACAGTGCCTATGTTCGCGAAGGATAACAACAGGTTTAACTGGAGAACAGGTCATGAAGCCTTGTTTAGAATCTGAATGCGAAGAAAGAAGAGACTGTATGGCGAAATTGATTTACTCCAGGTTGTTCGACTGGATCGTTACGTTTATAAACGCTTCAATCAAAGCACCGCCTGATTCCAAGTACTCATTTATTGGTCTTCTCGACATCTATGGCTTTGAAAATTTCGACTCCAACAGTCTTGAGCAGCTATGTATAAATTACGCCAACGAAAAACTTCAGCAACACTTTGTGTATCATTTCATGAAGGCGCAACAGGAGGAGTATCAGAAGGAGGGTGTAGAATGGTCTTTCCAGGATTTTGTTGATAATCGGCCTTGCTTGGATCTTATTGAAGGAAGGATTAGCATCTTTTCATTAATGAACGAGGAGTGCCGCTTAAAGAGAGAACAAGACGCGAATTCCTTCATCTCTCGACTAGAGACGTCATTGGTGAACAGCAACCACTTTACCTGTCCGAAGTTTAGACACAAAACGCACCAATTCGCCATCAACCACTTTGCGGAAACTGTGTCTTATCAAGCAGATGAATTGCTGAAGAAAAACAAGGACTTCATTCCTCCTGAGGTAATCGAGCTTTTACAAACCAGCAGAAACGTGTTGATTCAAGAACTCTTTCAATTCAAGAACAGCGAGGATCAAATGGAAAATCAAAGATTGGATGGAGACTCAAATGGAAGGAATTACAGAAGACATCGCCAGACTACAGTTACTGTAGTTCAAAAATTTAAGGTGTCTCTTGACAGTCTAATGTCCACCCTGCGCTCCACGAATGTTCACTACATTCGCTGCATTAAACCCAACACCAGATGTCAACCAGGCGTCTTCCATAGAAAACAGGTTATCTCTCAATTAAATGCATGTGGGGTCCTGGAGACCATTCGAATCAGTGCTGCTGGCTATCCCATCAGAATCTCTCACCGCGAATTCCTGAAACGATACAGCCTTACATTGAAACACCTCGACCCAGGGACGCGCAGTCACATGCCTCCACCCCTCGCTCTCTCTCCGAAGAAAGACAATGGGCACTTAAAGGGTACACCAGTTGAACGATTGAAACGTCGTTCTCGTCGACGTCACCGAAGCAGTTACGACCACTCGAGGCAAATCTGTCGGTCGATCGTGGAAGTCGTTGGACTAGACGAAGCTGGCGGGTGCAAAGAAAACAAACAAGAAAGAAATTGCGAAAGGGTCAAAATCGGCAGAACAAAAGTTTTTCTCCAAGAAAGCGCGATGGCAAGACTCGAAGAAGCTCGTAATGAGTGTCTGGTCAAATCGCTGTTGATTATTCAGAGTTGTTGGAGACGCTACAAGAGAAAATTGACAAAGAAAAGAAAGGCTGCCGCCGTGACGATTCAGTCTGTTTGGCGAGGTTGGATGGCAAAAAGGAACTTCCAAGGGAGATTGAAAGCAGCACAAGTTATCCAGCACTACATAAGACGCTATTTAGCTTTGAAGAGAAGCCGAGAGCGATGTCTTGCAAAATTGGTTGGTGATATCTCAGAAAACCAGGTTAATGCTGGCAAACTAAGTCCAGCATTCACAAAAAACAATTGTACTCACTTAAAAAGCGTAGAAAAGCTACAATTTTTGTCGGCGGACGGAGGCAATGGCTGCCAAACCTCTTCGTGGTTTGACCAATTAGACGACAAGAAGAATGGGAAATTCACTCCAACTTGCTCCGTCTTTCTTGGTAGCAAACGATTCACATTAAGTTCAGTGAGAGGTCATCAACGAATTAACCCTCTGGCTGTACTGATGTCAAACTGCAATGCCGCAAAACTAAACTCACAAGGATCGTCTGCAAACAAACAGAACCTTGGAATCCAGACAGTCAACAGGTCATCTGCAATCATATCCCGGCGAGACATCGCGAAGACTCCGGTTGCATTTCACTGTAAGGGAACCCCTCTTCCGCACGCCAACACTAGGCCGCATCAAGGGACAACAAGCAGTCTGGGGTTGGCTGGCATCAGTGAGATGGTAGATTGAGTGCCGAATGCAACTAAAGAACTCAGTGGAAAGAAATATCGTCAACTGCCGGCTAACTTTAAACGGCGGAGTCTGTCAGAAGCAAGTGCACATGATTGCAGAGGATGTACAATTTCTATTCAAATCGAAGCGAAAAGAAAAGGACAAGACAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q569U0	Unconventional myosin-XIX OS=Xenopus laevis OX=8355 GN=myo19 PE=2 SV=1
Q5SV80	Unconventional myosin-XIX OS=Mus musculus OX=10090 GN=Myo19 PE=1 SV=1
Q96H55	Unconventional myosin-XIX OS=Homo sapiens OX=9606 GN=MYO19 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13140 all species →	MYOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030050 all species →	Biological Process	vesicle transport along actin filament	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25838	MYO19; myosin XIX	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.