Detailed information of FUN_010635-T1 in Acropora pulchra

Genomic Location: ptg000007l:1014033...1070530
NR annotation: XP_044174136.1, thrombospondin-2-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P35441Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1
P07996Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2
Q03350Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004174 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05735
all species →		TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00629
all species →		MAMMAM domain, meprin/A5/muDomainInterproscan
PF02412
all species →		TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF00084
all species →		SushiSushi repeat (SCR repeat)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR017897
all species →		RepeatThrombospondin, type 3 repeatInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR028974
all species →		Homologous_superfamilyTSP type-3 repeatInterproscan
IPR000998
all species →		DomainMAM domainInterproscan
IPR008859
all species →		DomainThrombospondin, C-terminalInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR003367
all species →		RepeatThrombospondin, type 3-like repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199
all species →		THROMBOSPONDINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_010635-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP