Gene detail

Detailed information of FUN_010638-T1 in Acropora pulchra

Genomic Location: ptg000007l:1080665...1085110
NR annotation: XP_029194585.2, ribonucleoside-diphosphate reductase subunit M2 B-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_010638-T1

TTCAGATCTTTTCTTGTGTAGCGTTGAATTTTTTTTTGTCTTGCAATCACCATGCTTGGCGCACCTAACTTCATATTTCAAACTGACGAGACAAGCAAGCTCAAGAAGATCGTCGAGAACAAAGATGTCGAAAAGGACGGTGATAGCAACAACTTGAAGAACAACGAGTACCAAGGTCCTGAAAAACCAGTCTACAAATCTAAAACGAAATTCGATGACGTAGAGGGCGAGCCACTTCTTCGCGAGAATCCACGCAGATTTGTCCTTCTACCCATACAATATAAAGACATCTGGCAGATGTACAAGAAAGCAGAAGCATCTTTCTGGACGGCAGAGGAAGTGGATCTTTCCAAAGACAAAGATGACTGGGCCACCCTTTCGGATAATGAGAGATACTTCATCTCGCATGTCTTGGCTTTCTTTGCTGCAAGTGATGGCATTGTCAATGAAAACTTAGTAGAGTGCTTCAGTCAGGAAGTCCAGGTTCCAGAGGCAAGGTGCTTTTATGGTTTCCAGATTGCAATTGAGAATATACATTCAGAGATGTACAGCTTGTTGATTGAAACCTATATAGAAGATTCCCTAGAAAAAGATCATCTTTTCAATGCTATTGAAACGATGCCCTGTGTCAAGAAAAAGGCTCAATGGGCCCTTAACTGGATTAACCCACAAAGAGCTTCTTTTGGTGAGAGGATTGTTGCTTTTGCTTCTGTTGAGGGAATATTTTTCTCTGGATCTTTTGCTGCTATTTTCTGGTTAAAAAAGAGGGGGAAGATGCCAGGTCTTACTTTCTCAAACGAACTCATAAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGTTTGATGTTTTCATACCTTATCAACAAACCATCAGAAGAGAGGATCAAAGAAATTGTTAAGGATGCTGTTGTTATTGAGCAGGAGTTTCTCACTGATGCCCTTCCAGTCAAACTCATTGGCATGAATGATACTCTCATGAAGCAATACATAGAATTTGTTGCTGACAGGCTTCTTGTGGCCCTTGGCTGTTCAAAGGTTTACAATGTTCCAAATCCATTTGACTTCATGGAAAACATCTCATTGGAAGGGAAAACAAACTTCTTTGAGAAAAGAGTTGCAGAGTACCAAAAGGCTGGTGTGATGTCTATGACTAAAAAGACAACTTCTGACCACATGTTCAAAACAGATGCAGACTTCTGAACTTGAAAATGTGTTTATATCAAACAATTCAAAGATTGCACATAAGGATTGTATATATTAGGACACAATTTTGCTCCAGAATATACTTTTATCAAAACACAAAACATTTCAACAGCCTTATTCTTACTCTTTGATTGTAATTTTTAATTTTGTAAATATCTCTTTTCTGAGGTTTCTTCTGTGTAATTGTAAACTCTTTTGTTTTAAAAAATATTTTTATTAAAATACCTTTTTGACTATATTTCTTCATTTTATACCCTTAAGAACCATGGTGGGGCTTGCAATCAACCTTTTCCTGAATATTTGTATTAGGGATCTCAAGACACCCTTTAAGTAATGACAACACCAATAGAAGAGCTGTTACAAAAACTTTTTTATTCTACTTGGAAGAAGGTTAACTCAAGGACTTTGATATAGCTGGTTGATATTTCCATCAATATGGTTAACTGTCAACCACTTAGTTAAAACAGAGTTATTTACTCTGGTTAAAATTGTGTTGTCTGCAAGAAGTAAGGTAAATCTAATATGCAATGGTACCCTCCAATAAACAACTATCATTAAAAAAAAAAGAAATTATCAAACTGCAGCATTCAAGGCCTCATCACTGCAGTGATGAAAGCAGAGATTGAGATTTACATTCAAAGCCACACCAAGCATCGTACACTGGTGGTAATATCTAAGCCATAGCAGAGTGCTGAAACTGGCAAGCATGTACTATTTAACATTTGATTGAGCTCTGAGTCAGCAGTCCATGAGGGCAAGAGGAATAATTTTTTGAGTAAAATCCAACTAGTTAGTCAAAAAAACTATTAAGACAAAGCATCTTGCACCTGTTTAAGGTAGACTTTAATCCTTTTTTTGTTGATAAAACATAAATATGGTGGGTGCTTATACATATTTAACAAAAATTATTATTCACCATTTTTACCTAAACGAAGGTGAAATGTACATAGTCAAATCTAACTAGTGGTATTATCAATGCTGCATTCTGACTGGTTAAGCTACCACTAGGCTATGTGTTATAGCCCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79733	Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio OX=7955 GN=rrm2 PE=1 SV=1
P31350	Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens OX=9606 GN=RRM2 PE=1 SV=1
Q4R7Q7	Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca fascicularis OX=9541 GN=RRM2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003096 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00268 all species →	Ribonuc_red_sm	Ribonucleotide reductase, small chain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030475 all species →	Active_site	Ribonucleotide reductase small subunit, acitve site	Interproscan
IPR000358 all species →	Family	Ribonucleotide reductase small subunit family	Interproscan
IPR033909 all species →	Family	Ribonucleotide reductase small subunit	Interproscan
IPR012348 all species →	Homologous_superfamily	Ribonucleotide reductase-like	Interproscan
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23409 all species →	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004748 all species →	Molecular Function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009263 all species →	Biological Process	deoxyribonucleotide biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10808	RRM2; ribonucleoside-diphosphate reductase subunit M2	EC:1.17.4.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.