Detailed information of FUN_010714-T1 in Acropora pulchra

Genomic Location: ptg000007l:2045248...2050856
NR annotation: XP_015757767.1, PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8WV22Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens OX=9606 GN=NSMCE1 PE=1 SV=5
Q5RAZ5Non-structural maintenance of chromosomes element 1 homolog OS=Pongo abelii OX=9601 GN=NSMCE1 PE=2 SV=1
Q3T0X7Non-structural maintenance of chromosomes element 1 homolog OS=Bos taurus OX=9913 GN=NSMCE1 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006094 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08746
all species →		zf-RING-likeRING-like domainDomainInterproscan
PF07574
all species →		SMC_Nse1Nse1 non-SMC component of SMC5-6 complexFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR014857
all species →		DomainNon-structural maintenance of chromosomes element 1, RING C4HC3-typeInterproscan
IPR011513
all species →		FamilyNon-structural maintenance of chromosomes element 1Interproscan
IPR002219
all species →		DomainProtein kinase C-like, phorbol ester/diacylglycerol-binding domainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20973
all species →		NON-SMC ELEMENT 1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0030915
all species →		Cellular ComponentSmc5-Smc6 complexInterproscan
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22817NSMCE1, NSE1; non-structural maintenance of chromosomes element 1EC:2.3.2.27
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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