Gene detail

Detailed information of FUN_010897-T1 in Dendrogyra cylindrus

Genomic Location: contig_15:6333078...6350708
NR annotation: KAJ7337808.1, peflin or Penta-EF hand domain-containing protein 1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_010897-T1

atggcggGTCAATATCCTGGTTACAGCGGTTATGGAGCGCCATCTGGTTCACATCAATACGGTGGACAAGGTTATGGAGCTAGTCCTGGCTATCCCCCTCAGATGAGTTATCCACCCCCTGGTGGGGGATACCCAGGGGGTTATGGAGGACATTCAGCTCCCCCTCCAGGAGCTGATCCTACCTTATGGAATTGGTTTGTCACTGTTGATAGAGACAGGTCAGGTCAAATAACAGCTGATGAGCTCCAACAGGCACTGCTCAATGGAAACTGGTCTCACTTCAACAGTGAAACCTGCAGGCTAATGATTGGTATGTTTGACCGAGATCAGTCTGGTACCATCAGTTTCCAAGAGTTCCAGCAACTTTGGCAATATATTCAGCAGTGGAAAGGTGCCTTTGATAGATATGATTCTGACAGATCAGGAGCCATAGAGGGTAATGAATTGCATCAAGCGTTTTCTCAGATGGGTTTCAATGTGTCAGCTAATTTTGTTGGCTTAGTGGTTACAAGGTTTGACAGGCTTGCCCGCAGGAGCTTGAAGTTGGACAGTTTTATTCAATGCTGTGTAATGTTACGAGGGCTGACAGAAGCATTCAGAGCAAGAGACACAAGTCTGACTGGCAATATCACTATTAATTATGAAGATTTCATGTGCATGGTGCTTTTAAACAAGCCTAATTAATAAAGTTTATGAGTCTAAACAAGACTCTAAATATTTTGACTGTATTTTGCTTGTTCAGTTAGACTCAAGCTCAATGTTAATCAATGAAACTAATAATCAATGGAAAAATAATGTTGATATATGACAGTCAGTGCCCAGTAAGTAATTGATCATTGGATTTACATCAGTTGATAGCAATGAAACAGCAGAGAGTTGAAGGCATTGTATTAAATGATAAGGGACTGACCATTATATTTCTggaggggggatgaaaaatattgaaaaaaattgtttgcagggcctaaaaagaattgcttgcaaacatgatatgtgtaaaaatattagtttgcatttcggaaaaaaaaaatggttgcagaggtgcataaatttaaaataaagtttccagaggaaaatttttcatacccccctttcaaaaataatggtccgtcccttacatCCGTTGAAAATCTTTTAAAGTAACCTAAGCTTAGAGATGTGGTAAGTCTCGTGTTAGTCTTGGACACTAAATACACAATGGCCAAGACGTGATTTATAGACATGTATTGCTGCAGGCAGTAAGCcaaagcatgggacaaagaaaaaacaagtgACTCCGTGAAAGGAAGTTGAACCCATTACCCTCCTCACTGTTTAGACACTCGGTCAGGTAAACTCAGTCATTTTTCCTTGGTTCATATATGACACTGTTATGATCAGTCAGGTCAAAACCATCCCCATGATAAATATATATTGAACATATTGTGTTTTTTGAGTAAGCAAAAGTTCCCAGACAGaactaaataacaaaaaaggtACTATGTTTTTGCTGTCGCATGGGATTCCATGGTCTCTGCTGAAATGTGTAGTTTGCAGAGAGAATTCAGTGATGAATTAATGTTAATTTGATGAGTAGCTTGATGTAATTATTATACTGACAGTGTGTTAGTTAactaattttcaattttcaatttatcAATTAGGTTTCTGattattgattttcattgattaagtACGTCAGACTCGAGTCAAAGTGGCCCACTCGAAGTGTGAGTAGCAagactttgtttgtttgttttttcttcgtTTCCACTTTTTTTTACACAAATTACCAATCACAGTCACAATTTGAAACAACGATCGAGACATTTGTTGACATTTAATTTTCCCGTCATTTTTGACACATGTTTGTTTTGAGAAACAGCCAATCACCGCTGTAATTCGAGATAATGTGTGAGGCATTTTTTCAGACCTTGTTCACCATTTTTAAATAGCAGAATATTTTAAAACGAGTGAAATTGTCAAAATTAGAATCGCGGTCTCGGGTTgaaatatatgttgtggttcaattttatccttggttcaa

Protein

Uniprot

Uniprot term	Description
Q5PQ53	Peflin OS=Xenopus laevis OX=8355 GN=pef1 PE=1 SV=1
Q6DC93	Peflin OS=Danio rerio OX=7955 GN=pef1 PE=2 SV=1
P12815	Programmed cell death protein 6 OS=Mus musculus OX=10090 GN=Pdcd6 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR051426	Family	Peflin/Sorcin Calcium-Binding	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46212	PEFLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0048208	Biological Process	COPII vesicle coating	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23905	PEF1; peflin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala