Gene detail

Detailed information of FUN_011176-T1 in Dendrogyra cylindrus

Genomic Location: contig_16:1322520...1336675
NR annotation: CAH3104418.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_011176-T1

ATGGAAGAATACGCAGAATCAACAGTGGTACTTCCTTTTCGAAAAGGTACAActacgtttcacaaaattcacCTTCGCCCTGAAGTAGACCCAATCGAATTCGAcgctgaaaaagagaaggcaGTACCGATGGCGAGCGATGAAGCAGCAGGGGTTATCATACCAGCAAATAGTTTGATTGACAAGGACGGAAATCCTAAAAAAGGTAAAGCTAAGGTGAAAGTACAGTTCAACGATCCCAGGAACGAGCGAGATATTCTGGAAGCACCTGGCGATTTCACTACTATAGATGAAGAGGGTGAAGAACAATTACTCAGAACGtatggtgttttcaagattaAAGTGCAGGACGAAAATAACCAACAACTTAGCATCACTAAGAATCTTCAACTTAACATCGATATAGAACAACTGACTGGAGAGAGTTTTAATGAGTCTGAATCCTTGCCTCATTTGTGGTGGCTAGATGAGAAATCCGGTAGGTGGGTGGACGCAGGCGAACTTAAACGAAACAAAGAACTTACAGAACGCCCAAAGAGACAATTACGGTCCAGAGCATTTTCTGGAGAAATAAGGCCTGAGAACATTCGAAATGCCTATAATCTTGATAAAAGCCTTGACAGGTGTTTTGCTAAGCTTAGAGCCATCGGACAAGGTGGAGCAGGAGTACAAAATGCGAAAGTCACCAGCATTTTCGTTAATCCTCGGGGTCGAGCAATTCAGGGCTACTTAACCCGAACAACTGGATTAAATGGTTACCTGTGTATCTCAACTCAGTGCAACAGCGATGGTTATCTCGAAGTGGAGAAGGACGGATTGCCTTTATTGCCTAATCAGATAGACGTGGATCGCCTCCCTCTCCAAGTGCGTGCCTCCATTGTAGACAGACGAAGAATCAGATTTAATCCAGGCGCGTGGATCAATAATGGCCCTGTTTACCAGAGGAGCCAATCAGGTAATTGTTGGTCTCAGAGCGCGAGTCAGAGATTCTTCTCATTTCATCGTCAAGACCACAGACCAGATGTCTTCAACCAAGAGTACGTCCCTCTAGTCAACGCGGCTCGTTTTCGTGCGTCGTCCCGCTTCAGACGATGCTTTGTTAAGATCGTGACTTCTGGAACGACAAGTACCCTAGTGCAGGCAGAGAGCTTCTCCCCAGATGGACAAACAAAGCTTGGAGAAACGATTAAACAGACCGAGCAAGTTGGTAACTTATACGCAGCATGCTTAGAGTACAGTTGTCCTCGACGAACCCAGACATTAATTCGCTTTACAGTGTTAACGGGAGAATGTCAAAAAAGTAAGGTGAAAAGACGTCTGGATGCAGGAATAGTCAGCGGTCCCGCACCAAACGTGGAAAGAGTTTTAATCCCCACACTTACTGTTTTGTCCGGCACTGAATTTGGGATTTTCGAATGGTCCAGGGTCGCAGGCCAAAGTGTTAGAGATTTTGAAAGCACATGCGTTAATTCAGCGATAGACGAAACTGATCCTGGTGGTGATGCACTGAAAGCACCCGGAAGCAGAGGCACTGTGTCTTCAAATGTACGTTTATGCTCCCAGACCTTCTGCAAAAAGGGGAAGATGTGCGTTGAAAGGAAAGTTGGGAAGGTGGTAACCGCGGAATGTGTGTGCCCAACATCCtgtaaaaatgaaaaccttcCTGTCTGCAGTGTTTACCATGTGCAGTTCCTCAATCTCTGTGAGTTACACAAGTTTGCCTGTGCTAATGAAATCCATATTCAAGTAAAGCATCAAGGAAATTGCACTGAACAAGAGACCAAGTCAACTTGCACTAAGGAAGGAATCATCAATTTTCAAGACAAGTACCTGCAAAGAAATTTCAGAAGATACAAGGCTGACAGAGTGTTTACTTTGGTTGAAAGGTTGAGAAATGCAAAGCGAGATTTTGACGAGTACTGGGATACAGATAGGAACGGATTGCTGCAAGGAGATGAAATTTTAAACATCCTTCAGGAGTCGATGCACATTTCTAAATCATGCACAGTCGGGCTTATTAAATCATGCGATAACGATGGGAACCCAGGAATAAGCAAACAAGAGTGGTTTACCTGCTTCAAAACAGAAGTTGACGTCGAGTGTGTTTACATTATGCCAAGGATAGTACTACTCTTTGCGATTCTCGTTGTTATGTTTTGTGGAATGGCAGGAGTTTGTTCCTTCTCGGCAGTTACAGGTGGCAAGTGCGGAAGTAGTCAAGGATATACGGAATGTGTAGCCCTAAGTAACTGTGACGGCGATATCAGTTCGCATCTAGCAAATCACCACCTGACAAGAGAAAATACATGTGGAAAGGATTTAATACTGGCAAGAGCAGGTCTTTTAGAGCTCACAGAAGAACAGATTACGAATATGATGGTTTGTCCAGCTCATCGTTTTACTCCCGAAGCCTTGCCAGTATCCAAGACATCATGGAAAGAAAACAGCGGTGACAGGAACACATGTTGTTAA

Transcript

FUN_011176-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10591	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039675	Family	Cartilage intermediate layer protein 1/2	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR019577	Domain	SPARC/Testican, calcium-binding domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan