Detailed information of FUN_011178-T1 in Siderastrea siderea

Genomic Location: contig_8:13654790...13659953
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13000
all species →		AcatnAcetyl-coenzyme A transporter 1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036259
all species →		Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR004752
all species →		FamilyAmpG-like permease/Acetyl-coenzyme A transporter 1Interproscan
IPR024371
all species →		FamilyAcetyl-coenzyme A transporter 1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12778
all species →		SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0008521
all species →		Molecular Functionacetyl-CoA transmembrane transporter activityInterproscan
GO:0035348
all species →		Biological Processacetyl-CoA transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03372SLC33A1, ACATN; MFS transporter, PAT family, solute carrier family 33 (acetyl-CoA transportor), member 1EC:2.3.1.-
Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_011178-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
8TPM > 0
7Conditions
11.3Max TPM
0.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 2 1.18 11.31
Whole organism 4 4 3.81 5.84
unannotated 1 1 2.27 2.27
live coral tissue/skeleton 1 1 5.43 5.43

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP