Detailed information of FUN_011240-T1 in Siderastrea siderea

Genomic Location: contig_8:14769683...14778722
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04722
all species →		Ssu72Ssu72-like proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006811
all species →		FamilyRNA polymerase II subunit AInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20383
all species →		RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004721
all species →		Molecular Functionphosphoprotein phosphatase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006397
all species →		Biological ProcessmRNA processingInterproscan
GO:0005847
all species →		Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006369
all species →		Biological Processtermination of RNA polymerase II transcriptionInterproscan
GO:0006378
all species →		Biological Processobsolete mRNA polyadenylationInterproscan
GO:0008420
all species →		Molecular FunctionRNA polymerase II CTD heptapeptide repeat phosphatase activityInterproscan
GO:0070940
all species →		Biological Processobsolete dephosphorylation of RNA polymerase II C-terminal domainInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15544SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72EC:3.1.3.16
Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_011240-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
8TPM > 0
7Conditions
91.8Max TPM
3.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 2 4.38 62.19
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 19.02 44.63
unannotated 1 1 13.28 13.28
live coral tissue/skeleton 1 1 91.81 91.81

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP