Gene detail

Detailed information of FUN_011273-T1 in Acropora pulchra

Genomic Location: ptg000007l:8407169...8426894
NR annotation: XP_015763721.1, PREDICTED: T-complex protein 1 subunit zeta-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_011273-T1

CTAACTTACTTCGTACATTTTGACATTTGAAGATGGCTGCTGTGAAAGCACTCAACCCGAAGGCAGAAGTAGCGAGATCTGCTGCTGCCTTGCATTTAAATATAACAGCGGCAAGGGGACTTCAAGATGTCCTTAAAACAAATTTAGGACCCAAAGGCACCATGAAAATGTTGGTATCAGGGGCTGGAGATATTAAATTAACCAAGGATGGAAATGTATTGCTCCATGAAATGCAAATTCAGCATCCAACTGCTTCCTTAATAGCAAGAGTTGCAACAGCTCAGGATGATATCACTGGTGATGGAACAACTTCAAATGTGCTTATAATAGGAGAGTTACTTAAGCAGGCTGACCTGTACATTTCAGAGGGATTGCATCCACGGCTTATCACAGAAGGATTTGAAGTTGCAAAGAAAAAAGCATTAGAGGTTCTTGAGGAAGTAAAGGTTTCTAAGAAAATGGACAGAGATACTCTGATAAATGTTGCAAGGACATCCCTAAGGACAAAACTGCACTCTGAACTGGCAGACCTGTTAACAGAGGTTGTTGTGGATGCTGTCTTAGCTATTCGACAGCCAGGCAAGCCAATTGATCTTCACATGGTAGAAATCATGGAAATGATGCACAAGTCTGGGACAGACACATCTCTGGTGAAAGGACTAGTTATGGATCATGGAGCACGACATCCAGATATGCCAAAGAAAGTAGATGATGCCTACATTCTAACCTGCAATGTGTCAATGGAGTATGAAAAAAGTGAGGTCAATTCTGGGTTCTTCTACAAGAGTGCAGATGAAAGGCAAAAACTTGTTGATGCCGAGAGAAAGTTTACAGATGACAAAGTTCAGAAAGTTATTGACTTGAAAAGAAAGGTTTGTGAAGGAAATGACAAAGGATTTGTGGTTGTCAACCAAAAGGGGATTGATCCTTTATCTTTGGATATGCTGGCAAAGGAAGGTATCGTAGGGCTTCGACGTGCTAAGAGAAGGAACATGGAGAGACTGACCCTTGCATGTGGGGGTATTGCCATGAACTCCTTTGACGACTTGACATCAGATTGTCTGGGACATGCTGGACTGGTCTATGAACATGTCTTGGGAGAAAGTAAATTCACTTTTATAGAAGACCTGAAAAATCCTTTGTCTGTGACGATTCTCATCAAAGGTCCCAATAAACACACACTGACGCAGATCAAGGATGCAGTTCATGATGGCTTGAGGGCAGTAAAAAATGCCATTGAAGATGGAAGTGTTGTACCTGGTGCAGGTGCGTTTGAGGTTGCTGTCAATGCAGCCCTAACAGAGTTCAAAATGTCAGTAAAGGGTAGAGCAAGACTCGGTGTCCAGGCCTATGCAGATGCACTTCTTGTTATTCCAAAGTTGTTAGCTCAAAACTCAGGCTTTGATCCTCAGGAGACGATTGTGAAGCTTCAGGAGGAGTATGCCGAGTCCAAGACGCCAGTCGGTATTGATCTTTCCAGCGGAGAAGCATTAGTGCCTGCAGATAGTGGTATCTGGGATAATTATCGAGTCAAGAGACAGCTTTTGCATTCCTGTACTGTTATTGCAAGCAATCTTCTGTTGGTGGATGAGATTATGAGAGCTGGCATGTCATCTCTTAAGGGTTGAGACCAGAAATGAAAGGACATTTCCCTCGACGTTTGATGAATCTCTCTGATGTTTTCTCTTGTGGACAGTGTTGGCCTTAACGTAGTTTACTCTGTTAACACTCTAGAGTGCTTGTATTATACCGGGGTCACCTTTAAATCTGCTTTAACATGAAATGCTCTATGCACCTTGTTTGTGTTTCAATTTCGCAACCACTTGACGGAATTGTTAGACCGTTTTCAAGGCACAATTTTCCACTTCGTATTTTGACTCTAAAGTTTGCGGCTGAAGTTTTTGTATTCAGTGAAGCCTTACATGCGAATGATTATGGTTTGGGTCCCCCCTTTTGACCAGCTTGACTCGCTGCACATCATGAAAAGACCGAGTAACGGAATAGGCCATTTCCGAGTTCCCCTCTGTCTCTCTTTCAAAGCGAGGCTAATTGCGAAACCTTTTGTTATGATAATTAGTTCAATTTCAATATGAATGGGAACTGATTTTCTGAACAATGACTTTGCACTTAGCCTCGCTTTGAAGTGGAGGCTGAGGTGAACTCGGAAATAGCCTATTATTAATGCTTCGACCGCGTGAAGAACGGGACTAGAGAATCATAAGAGAGCGACAAGGTATCTGGGTGGTTTCAAAAATGAGTTTTCTTCCTTCTCTTGTTTATCACACGGCTGCCATGTTGAGGCCCGAGGGACCGAAAAATTTTATATTGTATCCCTTGAAATCGTTCCCATGCATGTCAATTCTAGGCTCAGGGTACGAAATCTGTGTTCTCTTACCGACATGCCGCCGGTCAATGGCCTTCTTGTTCTCTACATTTTTTTACACGTGAAGGACGATTTTCTTCTTCAGAGGCTGATTTCTTGCACCTGTCAGTCCTTTCTTATATCATGTTATTCGAGTTACCGTAAAGTTCCGAAAATACGCCCCTCCAAATATAAGCCCCTCGAACTCTCATCACAAAAAACTCTCCGTTAAATCGCCCCTCCGAATGTAAGTCCCCGAGGGATCACACTTTGAAACTGATACAAAATAAAACAAAGCAAAAATAGCACAATAACGCATATATCATTATTTTCGGAATTCCTCCAGACACATGCAGAACTTAGTCTGGTGATGAATACTTCGAATATTCCAGGAGAGCTTTCTTTTCTTAAAGGTTTTTTTCTTTTAAGATACCAGGTCTGTTAGTAAGGGAAGTTCGAAGATGCGTGAACAAAGTGCAATCCATAAAAACAAACGTTGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJ54	T-complex protein 1 subunit zeta OS=Gallus gallus OX=9031 GN=CCT6 PE=1 SV=3
P80317	T-complex protein 1 subunit zeta OS=Mus musculus OX=10090 GN=Cct6a PE=1 SV=3
Q3MHL7	T-complex protein 1 subunit zeta OS=Bos taurus OX=9913 GN=CCT6A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004762 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR053374 all species →	Family	TCP-1 chaperonin-containing T-complex	Interproscan
IPR002194 all species →	Conserved_site	Chaperonin TCP-1, conserved site	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR012722 all species →	Family	T-complex protein 1, zeta subunit	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR017998 all species →	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11353 all species →	CHAPERONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0005832 all species →	Cellular Component	chaperonin-containing T-complex	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09498	CCT6; T-complex protein 1 subunit zeta	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.