Gene detail

Detailed information of FUN_011305-T1 in Siderastrea siderea

Genomic Location: contig_8:15615401...15617716
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_011305-T1

AACCAGAGATGTACGAATGAAACCACCTAGAATACAAAATCAAAAATCGCACTCGATTAGAACAATGAGAAGATGAATCTTGAGCTAATAGAGTACTGGCTAATTACCTTCTTGATGGCATCTTCTAGGCCATAAACAAAACTcagacagaaaaaaatgaaaaagcacGCAAAGAAAGTCTTCTATCAGGAAGTGACCAGCTCACCTCCCACAGGAAGCTGGAACACAGTCTCGACTCCACGCTCGATCCAGTCTACTGCagatttccaagatggcggaggAAAATCCCTGTTCAATGCAAGAGAAAAAGCTTCTTGATTTTCCACCCGTTAACCTTTTAGacgcacttatttcttcatttccAAAGGAGTGGCGTGGAATTTTTGCAGCTCTCAATTCTGAACACCTTCCTGTTCAAGCGGCGTCTTTTTGGCTCCAGAAAAAGTCCGCAAACGAGAGATTGTCGGACATTCCTCCAAACTTTATCGATCTAATCGATCACATTGTGAAAGATTTTCCGGTTGTGTTGAATGATAAACTCTTCTTCAAGCCGAAGattctttttcttcctttaaATATCCAAAGGAATACCCTGGCGTTTATTGCTTATCACAGCAGTTCTGTTCCAGTTGAGTCTTTAGAAAAGCTTGTTCACTGTTTGGGAAAATTTACCGTCGAGTTGGAAGGCTGGAGGTTGACCCATTTAAAGATCCTCGAGTCAAAGGCAATACATTTGAAAGAATCGGATAGGGGAAGCTTACAAAAGAAGGAACAAAGAAAtgacaaagaaaacaacttgCTTTGTACAGACCTCATAACGGAGGAGTCAAGGGACAGGTTTGATAAGCTTATCGAAAAGAACAAATTTGCTGAATCTACCAAAAATATTTCCTGGTTTAGCAGTGTTTTCGATAGTCAAATGTTGGGTCATAATGCCAATGAGAACACAGTAGAACAACAGAAGAAAGAAGGTGGCCGCTGTGACGTTGATATGATTGACTTGACAGATACACGTACGCATGATACCAACTTACGTTCTGACAAAACATTGCAAGGAATTCATTCAGGATTTTCAGATGCTTTTGTTCAAAGTGATATTGAAATTATTGAAGATACTGAAAATCctgcaaaagaaataaaacttgaACATGATGCACATGCTATGACAGAGTTGACAGTACCTCTACCACCAGAACATTTCATCATTGGCAATGGAGATGTTCCAGAAGACTCGATCAACAACGCTGAGGATGTTCCAGAACATTTGATCATCAACAACAAGGATTTTCCAGAACAGATCACAGGAGAGGAAGTAACAGCTAATGTCACACTCAGTGATGCTGTTCAACAGAAAATCTGTGCTTTGAAAGACTTGCTCCAGAGCTCAGAGATTAATGAAATCAATTTTTCAAGTGAACTGGAGGCATTTTCCTCTTGTAGCAGCCTTGAAATGGAATGCATCTGTACCCAGTTGAATCTTGAAAGCATACAAGAATCCTCAGCAATTTCTTTGTGCCAGCAGTTTGTTGTCTTACCCACAGAACCAAGTTTTGGCAATGCAGCTGTTTTTGCAAGGTATGTCCTCTTACCTAAAATTCAAGGATTGAAACAAGCAGCCTCTAGAGTTCTGTTCTCTGCTGTTAGCCAGTTTGCAAAGAAACATTCCAGAGCATTTTGTGATGGTGTTGTCATAAGACTGATCCAGCAATCTGATTTAGACACTCCACAGGTAGACCTAATCAACAAAATAGTTAAAGAATGTCTCAGGGAAGACACAAGAATCCATTTGCTGCAGCTTATTTtgtcaatcaaaacaaacaatgaagGCTGTCCTTTCTCATGGACCGAGAACACGGTTTCTGTTGTACAGATGTTGGTCGACTTAAAGCCAGAGTTGAGTAGCCATTTGTTTGAAACCTTAGCAAGTGTGTTGGAGGTACAATCATGCCATCTGTCAAAGTCTCTGAAGTATGCCAAGATGTTGTTAGCTGTCATAAAAACATATGGACAACAGGTTTCCTTGCACCTTAACTCATTTGTATGCATTTTGGAAGGGAACAAAACTTTTCTCAAGAAAGCAGGACTTTCTGCCTTGAAGAAGACTGCAAAGAACTAAACAGAAATTCTCTTGAACATCTGTTGTCAGTAAAAACGTCTTGCGATTGCtaccctttgttttctttgattACATATGATCGTTTTTAGTTGTTATGGTATCTTCTCACAGTCTCTCTTTGTTGGTGTTTGTTACGTTTGTGACTTGcaagctttttgttttgtgtttaacTCTTATGTTAGAATCGCACACACTCCTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11510 all species →	FA_FANCE	Fanconi Anaemia group E protein FANCE	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039685 all species →	Family	Fanconi anemia group E protein	Interproscan
IPR021025 all species →	Domain	Fanconi Anaemia group E protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32094 all species →	FANCONI ANEMIA GROUP E PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan
GO:0043240 all species →	Cellular Component	Fanconi anaemia nuclear complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10892	FANCE; fanconi anemia group E protein	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.