Detailed information of FUN_011394-T1 in Siderastrea siderea

Genomic Location: contig_9:288230...342279
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19421
all species →
Fry_CFurry protein C-terminalDomainInterproscan
PF14228
all species →
MOR2-PAG1_midCell morphogenesis central regionFamilyInterproscan
PF14222
all species →
MOR2-PAG1_NCell morphogenesis N-terminalFamilyInterproscan
PF14225
all species →
MOR2-PAG1_CCell morphogenesis C-terminalFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045842
all species →
DomainProtein furry, C-terminalInterproscan
IPR039867
all species →
FamilyProtein furry/Tao3/Mor2Interproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR029473
all species →
DomainCell morphogenesis central regionInterproscan
IPR025614
all species →
DomainCell morphogenesis protein N-terminalInterproscan
IPR025481
all species →
DomainCell morphogenesis protein C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12295
all species →
FURRY-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000902
all species →
Biological Processcell morphogenesisInterproscan
GO:0005938
all species →
Cellular Componentcell cortexInterproscan
GO:0030427
all species →
Cellular Componentsite of polarized growthInterproscan
GO:0031175
all species →
Biological Processneuron projection developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_011394-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_011394-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
75TPM > 0
7Conditions
174.4Max TPM
70.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 19 81.83 147.93
holobiont · low.pH Control.temp 20 14 52.51 150.58
holobiont · control.pH_high.temp 20 18 81.57 174.41
holobiont · control.pH Control.temp 19 18 77.24 130.71
Whole organism 4 4 40.61 45.25
unannotated 1 1 17.08 17.08
live coral tissue/skeleton 1 1 35.49 35.49

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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