Gene detail

Detailed information of FUN_011517-T1 in Siderastrea siderea

Genomic Location: contig_9:2427745...2458856
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_011517-T1

ATGTCATCATATTCTGAGGAGACGGTTGAAGCCCCTCCAGCGAAAAAACGGAAAACTTCAAACTCGGACGGTGCTACGAACTCTGTGTCCCACGAAAATCATTCCACCGAGAAGGCCAAAATGGCGGATAACGGAAGTGTAGAGAATCAAATGGAGATAGACGAAGGGCTTTACTCCCGACAACTgtACGTTCTTGGCCATGAGGCTATGCAAAAAATGGCTGTCTCCAAGGTCCTCATTTCTGGACTGAAAGGACTGGGAGTAGAAATAGCTAAAAATGTTGTCTTGGGTGGTGTAAAATCAGTTACCCTACACGATACCGGATGTGTTGAAATGTCAGACTTGTCATCTCAGTTCTTTCTTCAAGCTGATGACATTGGCAAAAACAGAGCCGAGGTTTCTTTGCCCAGGATTTCCGAGCTCAACAGCTATGTCCGTATGTCTGTTAATACTGAGCAACTTACAGAGAAATTTCTAGGACAATTTCAGGTTGTGGTGCTTACACAGTCTAGCCTAGAGGAACAGCTTTGGGTTAGTGATTTTTGTCACGCACGGGGAATCAAGTTCATTATTGCTGACACGAGAGGACTGTTTGGtCAAATATTTTGTGATTTTGGTGAGAGTTTCAAAGTTGTGGATACAAATGGTGAACAGCCCATTAGCAACATGATTTCATCTGTTACAAAGGATGAAGAGGGTGTTGTCACTTGTCTTGATGAACAAAGGCATGGCTATGAGTCTGGAGATTTTGTCACTTTTGCTGAAGTGCAGgGAATGACAGAACTGAATCAATGTGAACCACGTGAAATAAAAGTTTTAGGTCCATATACCTTTAGTATTGGTGACACTAGAGGATATTCCGATTATGTCCGTGGTGGTGTAGTCACCCAAGTTAAAGTGCCCAAAATAGTCAAATTTAAATCATTTAGAGATTCCCTCACATCACCAGAGCTTGTTCTGACAGACTTTGCAAAAATGGAAAGACCTGGACAACTTCACCTTGGATTTGTAGCTCTACATAAATATGTGAAAGAATACGGGGTTCTACCAAGACCACGAAACGAGGAAGATGCCAAGAAGTTCATAGCTCTGGCTAGGAAGCTTAATTCAGAAAAGATATGCTCACAGGTGGATGAAGTGGATGAGCGCCTCTTAACTCGGCTGTCTTACAATGCCAGAGGTGATATTTGTCCCATGCAGGGTGTAATCGGGGGAATTACTGCTCAAGAAGTCATGAAGGCATGCAGCGGAAAGTTCAGTGCTATCTTTCAACTACTTTACTTTGATAGTCTAGAATGCTTGCCAGAAGAAGGTGAAATCTCAGAAGCTTCTTGCCAACCGACTGGATCAAGATATGATGGACAAGTTGCAGTCTTTGGAAGTGAATTTCAAAAGAAGCTTTCAGAGCAGAAGTACTTTATTGTTGGTGCAGGTGCCATTGGATGTGAACATCTCAAAAACTTTGCCATGATGGGATTAGCCTGCAGTGATGCAGGGTGCGTGTTTGTCACTGATATGGACACCATTGAGAAATCCAATCTCAACAGACAATTTCTATTCAGACCAGCAGATGTACAGCAAATGAAGTCAGAAGTTGCAGCAAGGGCAGTGAAGGTCATGAATCCAGAGATAAATATTACAGCTCACCAAAACAGAGTTGGTCCTGAAACAGAAAAAACTTACAATGATGATTTCTTTGAGGCACTTGATGGTGTGACAAATGCTTTGGATAACGTTGATGCAAgaATGTACATGGACAGGCGGTGTGTATATTACCACAAGCCACTTCTGGAATCAGGAACCCTAGGAACAAAAGGGAATGTTCAGGTTGTTCTGCCGCGCCTGACAGAATCCTACAGCTCCTCGCAAGACCCACCTGAGAAGTCAATTCCCATCTGTACACTGAAGAACTTTCCAAATGCCATTGAACACACCTTACAGTGGGCAAGAGATGCATTTGAAGGACTCTTCACTATTCCTGCTGAGAATGTTAACCAGTTTCTCAGTGATCCCAAGTTTATTGAAAGGACTGACAAACTTCCAGGCATGCAAGCAGTTGAAATTTATGAAAGCATCAAGAAGTGTCTAGTTGATGAGCGGCCTCGTGAATTTGCTGACTGTGTCAGATGGGCCAGACTACAGTTCCAGGAGAACTACCACAACACCATTTCACAACTGCTGTACAACTTTCCCAAAGACCAGGTAACAAGTTCAGGACAACCATTTTGGTCTGGACCCAAGAGATGTCCTCATCCTTTGGAGTTTGACCCCCGTGAGGCAACACATATGGACTACATCATTGCCGCAGCTAATTTGAGGGCGTTCATGTTTGGAATCAAAGGGTCAAGAGACCAAAGTTTAATCCTTGATTGTCTGAAAACTGTTAAGGTACCAGCGTTTAAGCCCAAGTCAGGCGTGAAAATCTCTGTCACTGATGAGGAGGCCGCTCAAGAAGGCAACTCAGGGAATGTAGATGAAGATGACCTTGAAAAGGCCAAAGGCACCATTCCTACAGCGGAGCAATTGACGGGCTTCAAGATGCAACCTGTTGAATTTGAAAAGGATGATGACACGAATTTCCACATGGATTTCATAGTAGCAGCATCAAACCTGAGAGCGGCTAACTACGACATCGCACCAGCTGATAGACACAAGaGTAAACTAATTGCTGGCAAGATTATCCCAGCCATTGCGACCACAACTGCCTTGATCAGCGGACTAGTAGCTTTGGAATTGTATAAGATTGTTCAAGGCAATAAGAAACTGGAAACCTACAAGAACGGCTTCGTCAATCTTGCCTTGCCATTCTTTGGCTTTTCTGAGCCAATCAGTGCACCAAAAAACAAGTATTACGACAAAGAATTCACGCTATGGGATCGATTTGAGGTCAACGGTTTGAATGCAGCCGGTGAGGAGATGACTTTGCAAGGCCTTTTTGACTACTTTCAGAAGGAGCACAAGCTTGAAGTGACAATGCTGTCCCAAGGCGTCTGTATGCTGTATTCTTTCTTTATGCCTCCCGCTAAGAAGAAGGAAAGACTGGGAACGCCAGTATCTCAAGCCGTTGAAAAAatctccaaaaagaaaattaagccTTACGTCAAAGCCCTGGTGCTGGAGTTATGCTGTAATGACACGGATGGAGAGGACGTTGAGGTCCCGTATGTGCGATATCGCTTCCGGTAG

Transcript

FUN_011517-T1

CTTCGGGCGAGTCACGTTGGAGAACAGACAatttgtcagtgaagttttcCGGATTTTTCTGAGCTTAGCCTGTTGTTTGGGTCCTAGAAAAGCAGCTGCACATCACCTGGGAATAACAGACTATAAAACACCGCTATTTAGTTTGATGAGTGTAGTAGATGTCATCATATTCTGAGGAGACGGTTGAAGCCCCTCCAGCGAAAAAACGGAAAACTTCAAACTCGGACGGTGCTACGAACTCTGTGTCCCACGAAAATCATTCCACCGAGAAGGCCAAAATGGCGGATAACGGAAGTGTAGAGAATCAAATGGAGATAGACGAAGGGCTTTACTCCCGACAACTgtACGTTCTTGGCCATGAGGCTATGCAAAAAATGGCTGTCTCCAAGGTCCTCATTTCTGGACTGAAAGGACTGGGAGTAGAAATAGCTAAAAATGTTGTCTTGGGTGGTGTAAAATCAGTTACCCTACACGATACCGGATGTGTTGAAATGTCAGACTTGTCATCTCAGTTCTTTCTTCAAGCTGATGACATTGGCAAAAACAGAGCCGAGGTTTCTTTGCCCAGGATTTCCGAGCTCAACAGCTATGTCCGTATGTCTGTTAATACTGAGCAACTTACAGAGAAATTTCTAGGACAATTTCAGGTTGTGGTGCTTACACAGTCTAGCCTAGAGGAACAGCTTTGGGTTAGTGATTTTTGTCACGCACGGGGAATCAAGTTCATTATTGCTGACACGAGAGGACTGTTTGGtCAAATATTTTGTGATTTTGGTGAGAGTTTCAAAGTTGTGGATACAAATGGTGAACAGCCCATTAGCAACATGATTTCATCTGTTACAAAGGATGAAGAGGGTGTTGTCACTTGTCTTGATGAACAAAGGCATGGCTATGAGTCTGGAGATTTTGTCACTTTTGCTGAAGTGCAGgGAATGACAGAACTGAATCAATGTGAACCACGTGAAATAAAAGTTTTAGGTCCATATACCTTTAGTATTGGTGACACTAGAGGATATTCCGATTATGTCCGTGGTGGTGTAGTCACCCAAGTTAAAGTGCCCAAAATAGTCAAATTTAAATCATTTAGAGATTCCCTCACATCACCAGAGCTTGTTCTGACAGACTTTGCAAAAATGGAAAGACCTGGACAACTTCACCTTGGATTTGTAGCTCTACATAAATATGTGAAAGAATACGGGGTTCTACCAAGACCACGAAACGAGGAAGATGCCAAGAAGTTCATAGCTCTGGCTAGGAAGCTTAATTCAGAAAAGATATGCTCACAGGTGGATGAAGTGGATGAGCGCCTCTTAACTCGGCTGTCTTACAATGCCAGAGGTGATATTTGTCCCATGCAGGGTGTAATCGGGGGAATTACTGCTCAAGAAGTCATGAAGGCATGCAGCGGAAAGTTCAGTGCTATCTTTCAACTACTTTACTTTGATAGTCTAGAATGCTTGCCAGAAGAAGGTGAAATCTCAGAAGCTTCTTGCCAACCGACTGGATCAAGATATGATGGACAAGTTGCAGTCTTTGGAAGTGAATTTCAAAAGAAGCTTTCAGAGCAGAAGTACTTTATTGTTGGTGCAGGTGCCATTGGATGTGAACATCTCAAAAACTTTGCCATGATGGGATTAGCCTGCAGTGATGCAGGGTGCGTGTTTGTCACTGATATGGACACCATTGAGAAATCCAATCTCAACAGACAATTTCTATTCAGACCAGCAGATGTACAGCAAATGAAGTCAGAAGTTGCAGCAAGGGCAGTGAAGGTCATGAATCCAGAGATAAATATTACAGCTCACCAAAACAGAGTTGGTCCTGAAACAGAAAAAACTTACAATGATGATTTCTTTGAGGCACTTGATGGTGTGACAAATGCTTTGGATAACGTTGATGCAAgaATGTACATGGACAGGCGGTGTGTATATTACCACAAGCCACTTCTGGAATCAGGAACCCTAGGAACAAAAGGGAATGTTCAGGTTGTTCTGCCGCGCCTGACAGAATCCTACAGCTCCTCGCAAGACCCACCTGAGAAGTCAATTCCCATCTGTACACTGAAGAACTTTCCAAATGCCATTGAACACACCTTACAGTGGGCAAGAGATGCATTTGAAGGACTCTTCACTATTCCTGCTGAGAATGTTAACCAGTTTCTCAGTGATCCCAAGTTTATTGAAAGGACTGACAAACTTCCAGGCATGCAAGCAGTTGAAATTTATGAAAGCATCAAGAAGTGTCTAGTTGATGAGCGGCCTCGTGAATTTGCTGACTGTGTCAGATGGGCCAGACTACAGTTCCAGGAGAACTACCACAACACCATTTCACAACTGCTGTACAACTTTCCCAAAGACCAGGTAACAAGTTCAGGACAACCATTTTGGTCTGGACCCAAGAGATGTCCTCATCCTTTGGAGTTTGACCCCCGTGAGGCAACACATATGGACTACATCATTGCCGCAGCTAATTTGAGGGCGTTCATGTTTGGAATCAAAGGGTCAAGAGACCAAAGTTTAATCCTTGATTGTCTGAAAACTGTTAAGGTACCAGCGTTTAAGCCCAAGTCAGGCGTGAAAATCTCTGTCACTGATGAGGAGGCCGCTCAAGAAGGCAACTCAGGGAATGTAGATGAAGATGACCTTGAAAAGGCCAAAGGCACCATTCCTACAGCGGAGCAATTGACGGGCTTCAAGATGCAACCTGTTGAATTTGAAAAGGATGATGACACGAATTTCCACATGGATTTCATAGTAGCAGCATCAAACCTGAGAGCGGCTAACTACGACATCGCACCAGCTGATAGACACAAGaGTAAACTAATTGCTGGCAAGATTATCCCAGCCATTGCGACCACAACTGCCTTGATCAGCGGACTAGTAGCTTTGGAATTGTATAAGATTGTTCAAGGCAATAAGAAACTGGAAACCTACAAGAACGGCTTCGTCAATCTTGCCTTGCCATTCTTTGGCTTTTCTGAGCCAATCAGTGCACCAAAAAACAAGTATTACGACAAAGAATTCACGCTATGGGATCGATTTGAGGTCAACGGTTTGAATGCAGCCGGTGAGGAGATGACTTTGCAAGGCCTTTTTGACTACTTTCAGAAGGAGCACAAGCTTGAAGTGACAATGCTGTCCCAAGGCGTCTGTATGCTGTATTCTTTCTTTATGCCTCCCGCTAAGAAGAAGGAAAGACTGGGAACGCCAGTATCTCAAGCCGTTGAAAAAatctccaaaaagaaaattaagccTTACGTCAAAGCCCTGGTGCTGGAGTTATGCTGTAATGACACGGATGGAGAGGACGTTGAGGTCCCGTATGTGCGATATCGCTTCCGGTAGACTGAGGTCCCGTATGTGGTTATCAGTCTCACTACGCGTTTCTTtggataaaaaagaaaaaaatgaacaaaaaacagTAAAGTGACTTTAGTAAAAGAATTAATGAAACAGACTGGCTTAGAGCCCGAGTGGTACagttttattttagttttgttaGTTTAAGTTGCTGAACTGAACATCTGCTGTGTGAAAACACCATTGGCTTAATAAAGAAAGTGACTTGTATTGTGCTGTTAGATGTtctttattcaaaagttgctcTCTTGACTGTTTTACCTGACATAATTGCCTCTCAGAAACTTATCCGGCAATAGATGGTCAACACACACACGTGAAAGTGGGAACATTGAGTGTGAACACACAGGGAGAACTAGCTACTGAAGTTAGGCACTAACACACATAAACACGCACGCACAACTGGAAGCGAGAGGATAAGCTAGCCGTGTCATTGCCGCTAGCCGTGTGAAAAGTCTGTATGAAACTCGTCAATAGATCCTGTGTTCACACGTGAAGAAGGCAGGAATTCAGGCTGGCCCAGTTCAGCCGAAAAGGAAACCTGTATGCATTTTTAAATGCATACAGGTTACTAAGAACACGTTGTTGCgggaaatgtttttcttttcagtcgTACGAGTGACGTGTTCTCGAAACACTAGTTGCTTTCAGAAAACgagaaaattattttgcatctagcctgcgtagcaagcgttttcgTAGGCTTTTCCGCCCgctcgaggcatttttcgctttttggcggcgtgaaatttggggcgagcgcaacactgatggaaggagcgctcgccccaattttcgcgcgttcacaaagcgaaaaatgcttcaaaataCTACAGAAacacttgctacgcaggctattttGAATCTAGACAAAAACATTGTTGCTTCCCGTAaacttagcctgagaaaacagccgacgtttctcgaggtcgccacttgagcccatTC

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E1\|ThiF\|ThiF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16191 all species →	E1_4HB	Ubiquitin-activating enzyme E1 four-helix bundle	Domain	Interproscan
PF09358 all species →	E1_UFD	Ubiquitin fold domain	Domain	Interproscan
PF00899 all species →	ThiF	ThiF family	Domain	Interproscan
PF10585 all species →	UBA_E1_SCCH	Ubiquitin-activating enzyme, SCCH domain	Domain	Interproscan
PF16190 all species →	E1_FCCH	Ubiquitin-activating enzyme E1 FCCH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032420 all species →	Domain	Ubiquitin-activating enzyme E1, four-helix bundle	Interproscan
IPR000011 all species →	Family	Ubiquitin/SUMO-activating enzyme E1-like	Interproscan
IPR035985 all species →	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR038252 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, C-terminal domain superfamily	Interproscan
IPR042449 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1	Interproscan
IPR042302 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, FCCH domain superfamily	Interproscan
IPR042063 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, SCCH domain	Interproscan
IPR018965 all species →	Domain	Ubiquitin-activating enzyme E1, C-terminal	Interproscan
IPR000594 all species →	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR045886 all species →	Family	ThiF/MoeB/HesA family	Interproscan
IPR019572 all species →	Domain	Ubiquitin-activating enzyme, SCCH domain	Interproscan
IPR033127 all species →	Active_site	Ubiquitin-activating enzyme E1, Cys active site	Interproscan
IPR032418 all species →	Domain	Ubiquitin-activating enzyme E1, FCCH domain	Interproscan
IPR018075 all species →	Family	Ubiquitin-activating enzyme E1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953 all species →	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008641 all species →	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0004839 all species →	Molecular Function	ubiquitin activating enzyme activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0032446 all species →	Biological Process	protein modification by small protein conjugation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03178	UBE1, UBA1; ubiquitin-activating enzyme E1	EC:6.2.1.45	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_011517-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

30TPM > 0

7Conditions

172.8Max TPM

22.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	4	11.60	73.32
holobiont · low.pH Control.temp	20	2	4.31	74.33
holobiont · control.pH_high.temp	20	8	12.33	56.50
holobiont · control.pH Control.temp	19	10	28.92	81.53
Whole organism	4	4	116.93	133.45
unannotated	1	1	172.81	172.81
live coral tissue/skeleton	1	1	114.92	114.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	73.32
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	61.07
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	56.00
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	41.56
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	74.33
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	11.89
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	56.50
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	43.22
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	39.95
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	26.26
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	23.76
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	21.99
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	21.68
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	13.19
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	81.53
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	79.41
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	66.94
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	58.15
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	56.29
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	55.06
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	47.13
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	41.78
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	37.15
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	26.00
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	133.45
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	121.03
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	111.62
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	101.62
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	172.81
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	114.92

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.