Gene detail

Detailed information of FUN_011699-T1 in Acropora pulchra

Genomic Location: ptg000008l:333828...338848
NR annotation: XP_015769507.1, PREDICTED: 40S ribosomal protein S4, X isoform-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47836	Small ribosomal subunit protein eS4 OS=Gallus gallus OX=9031 GN=RPS4 PE=1 SV=2
P49401	Small ribosomal subunit protein eS4 OS=Xenopus laevis OX=8355 GN=rps4 PE=1 SV=4
Q642H9	Small ribosomal subunit protein eS4 OS=Danio rerio OX=7955 GN=rps4x PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006633 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08071 all species →	RS4NT	RS4NT (NUC023) domain	Domain	Interproscan
PF00900 all species →	Ribosomal_S4e	Ribosomal family S4e	Family	Interproscan
PF16121 all species →	40S_S4_C	40S ribosomal protein S4 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR000876 all species →	Family	Small ribosomal subunit protein eS4	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR038237 all species →	Homologous_superfamily	Small ribosomal subunit protein eS4, central domain superfamily	Interproscan
IPR041982 all species →	Domain	Small ribosomal subunit protein eS4, KOW domain	Interproscan
IPR013843 all species →	Domain	Small ribosomal subunit protein eS4, N-terminal	Interproscan
IPR013845 all species →	Domain	Small ribosomal subunit protein eS4, central region	Interproscan
IPR032277 all species →	Domain	Small ribosomal subunit protein eS4, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11581 all species →	30S/40S RIBOSOMAL PROTEIN S4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02987	RP-S4e, RPS4; small subunit ribosomal protein S4e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.