Detailed information of FUN_011736-T1 in Siderastrea siderea

Genomic Location: contig_9:5579438...5589933
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_011736-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR026205
all species →		FamilyProgesterone-induced-blocking factor 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18950
all species →		PROGESTERONE-INDUCED BLOCKING FACTOR 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0034451
all species →		Cellular Componentcentriolar satelliteInterproscan
GO:0060271
all species →		Biological Processcilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16538PIBF1, CEP90; progesterone-induced-blocking factor 1-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_011736-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
14TPM > 0
7Conditions
38.6Max TPM
2.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 1.09 21.71
holobiont · low.pH Control.temp 20 2 2.46 27.41
holobiont · control.pH_high.temp 20 3 3.57 38.61
holobiont · control.pH Control.temp 19 2 1.62 15.94
Whole organism 4 4 4.89 7.09
unannotated 1 1 5.72 5.72
live coral tissue/skeleton 1 1 6.68 6.68

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP