Gene detail

Detailed information of FUN_011739-T1 in Colpophyllia natans

Genomic Location: contig_17:389981...398850
NR annotation: XP_020610694.1, hemicentin-2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_011739-T1

GCCCATTCCGTGAATAAGGGAACAACAGCTAATCATATGCTAAAGCAACTTtgtttatatttctttgttttggaagCTTGAACATCAACCACTAAGAGGCAAGCATTTAAAGAGCCTGTCATCGGTGTTATTACACGAAGATTTTGGACAACTCAAGGGTTTAGACACGTTTTGTTGTTACTCTCTACAAGTTGTACTACAAGTAAAACAACAGGACCCACAGAAATGGTTTTTTTCAGCCTGGTTTTTTTGGCTTGCATTGCTGGATCTGTTGGAGCTGCGGTGAACATTGTCACACCTCTTCCCAACAACATATTTGCAATCAGTGGATCAGCGGTTAATGTCACGTGCATTTTTGTTGGAGATAATGATCAGCCCCCGCGTAGGGTGACATTtcagagaagaaaagaagatgGAGTTGACTGGTTTGATATTCAGGACTCGGAGAGAGTGTTCCAGACAAACAAGACACAAGgAAACAGATCAAGAGTTACGCTGCACTTCACGAACATTACAGTACAAGACGATCAAGGGAAGGGACTTTACCAATGCATCGGATATCCTGCTAAAGGTGATTCAGACAGTCAGCGATTCACCGTACGAGTCACCGCAATCGAAGATTTACCGGTGGCTCGTGTGATTCCAAATGTGACAGTATCATATGGAGACAGCGTAAGACTCTACTGCAATCTGACTCACAAGAATAACGAGTTGACCGCCCCGATAGATACGGTTACATACCTAAGGGGTAATAACACGGTGAAAATAACCAAGGATGTCACACAGGCGTTGATCTTTAATTCTGTAAGAGTTAGAGATGGCGGGAACTACGTCTGTAGGATCCAAGTGCTGCTTCATTCACGGAGTTTCCCTTATCACGTCACCTCGTCCCCAGGCTATTTGCACATTCGTGTCCGCTTTCCAATCAAGGAATCAAAACTTGTTGCTGCCATAGGAGATAGTGTCACCCTGGTTTGCAGCGCTGAAGGTTATCCTTTGGACATTGAATGGAAGAAAAATGAGCCGGAATCTACTGCTGTTATCAAACCTGATGATCGTATCACACTACAGGGTGAATGTAGTTTCTGTGATTCCATCCTTATAATCCAAAACGCAACAACAGAGGATTCTGGGAACTACTCGTGCAATGCACGTGACGGGCCTGGACAACAGTATTTCCTTGTTACAGTGAACTCGAACACCACTACTGCTGGCGCGACATCTCGTTTTGTGACAGCCATGTTACCAGCACTGGGCTTGTGGACTTGGTGGCCTTCAATATGAGCACTAGAGGACAAGCTTAAAATTATTTCCCCAGAAACATCATCACTCCTATTCTAGGACTTTTATGCCTTACAAACTTGAGTGACGTATTAGCAATTTTTATCATACTCATACCGAGGTAACGCTATTTCACAAGACGTAAATTCCCCCATTTCACGATGCAGATGATAGTTAATAATTACTGGAccaggttgagcaaaatatcgtgctTTGTCAGCGGCGAGCAGATCAAATAACCAGGAGCCCATCGCTGGGAGCGTGCAACTACCCTAtcttcctgtcacggcgttttcacagacccaTCTAtatttagtttgaatttactgCGGATTTAGACCCCAGAGGAGCCTCAGTGACCAAACACAAGCACGCACTTAATTTTTAACATACTTCATCATTTCACCGGAGGACTAAAAGAAGATAAACGCCATTTTTTCCTTACCTTTGCGCGTTCAGGTAGACCAGAACTCatctatttcgcgggaaaagaaatctaaaaatagatcggtttgtataaatgccgtgacatagacTTACGATGAGAGATGCACGCTCCTAGTGGTTGGCTCCTGAGATAATTGATCTGATCTCTCTCCGCCactgaaaaggaagaaaaaattcGCTTTCATTCTGCTTATGTTCCTCAAAACGTTAAGGCAGTAGCTTACATTCGGAGattaacttgaaaataaagacATTTTTACAGTAACTTAGATTAGAGGAGCTCGACAGTTAATTTGAATAGTGCATGGAGATTATCAAACGTTAAGATAATATTGCTACTAAggaatccccccccccccccggaggAGGGTGGGAAGTAGCATGTTCgcttgaaaattaaatttttttctcccTTGTTCCCTTAATAAATTTCATTGATTCACAAAATTTTTGATCAAAATTCCCTTTTATTGAGGTAACCCTTGTTTCCTCGAATTAACACCCCAAATGATCctttttcctttgaaataaatgatcaTGTTCCCTTGTTCACAAAACCCCTAGGAGAAGCTTCTGCAAAACCCCTAGGAGGCGCTTCCCCAAAACCCCCTAGGAGGCGCTTCCACAAAAACCCCTAGGAGGCGCTTCCCCAAAACTCCTAGGGAGCCCTTTCCCAAAACCCCTAGGAGGCGCTCATAAAATAATACCTCCAACTCAAGACAACAGTACCTGACTCGTCGATTAATTATGTAATAAAATGGCTGTTTGATATTGTTCTAGAATACGCTTAGATTAAGGCATTCCTTGATAGTTTCTAAAAACACGTGTTCAAGGTAttttaataagtaaataaatgaaatgaagaaTAAATCGTGGAGTGACcc

Protein

Uniprot

Uniprot term	Description
Q9VN14	Contactin OS=Drosophila melanogaster OX=7227 GN=Cont PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075	BASIGIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0070593	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan