Detailed information of FUN_011762-T1 in Siderastrea siderea

Genomic Location: contig_9:5800208...5812299
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20413
all species →		BLTP1_NBLTP1 N-terminal regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047104
all species →		DomainBridge-like lipid transfer protein family member 1, N-terminalInterproscan
IPR033616
all species →		FamilyBridge-like lipid transfer protein family member 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31640
all species →		TRANSMEMBRANE PROTEIN KIAA1109Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0048488
all species →		Biological Processsynaptic vesicle endocytosisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_011762-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_011762-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
17TPM > 0
7Conditions
269.8Max TPM
15.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 5.37 107.35
holobiont · low.pH Control.temp 20 2 4.57 72.94
holobiont · control.pH_high.temp 20 6 43.34 269.81
holobiont · control.pH Control.temp 19 3 12.85 135.34
Whole organism 4 3 1.12 2.28
unannotated 1 1 0.10 0.10
live coral tissue/skeleton 1 1 3.94 3.94

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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