Detailed information of FUN_011795-T1 in Siderastrea siderea

Genomic Location: contig_9:6150209...6167758
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01477
all species →		PLATPLAT/LH2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001024
all species →		DomainPLAT/LH2 domainInterproscan
IPR036392
all species →		Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31718
all species →		PLAT DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_011795-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_011795-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
52TPM > 0
7Conditions
2,130.0Max TPM
356.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 12 236.46 920.38
holobiont · low.pH Control.temp 20 10 276.53 1,810.33
holobiont · control.pH_high.temp 20 13 448.90 1,804.41
holobiont · control.pH Control.temp 19 13 582.68 2,130.04
Whole organism 4 3 0.67 1.40
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 6.13 6.13

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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