Gene detail

Detailed information of FUN_011894-T1 in Acropora pulchra

Genomic Location: ptg000008l:2592118...2606024
NR annotation: XP_044177834.1, intersectin-1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_011894-T1

GGAGACTTTTTGACGATCAATGTCGTTCTTTTATTATTATTATTTTTTATTTCGCTTCTGGTTCTATTGAAGTTTCTTTCCAACTTTGTGAAATATTATTGATGTGGTGTTGAAAGTTGTTTGACATCTCGGCAGGTATTCTACAATCCCTTGGCTCAGTCTGGTATGCTGACCGAGAAAGAACTAAGCACTGTGTTTATCAACTGGAAAGAGCTGATTTGGTGCAATACTGGTTTGCTCAAGGCTTTTCTTATTCGCAAGAAAATGAGTAGCACTGTCGCTCTTACACAGATCGGTGATATCCTCTGTGAAATGTTACCTCGCCTGACAGCTTACGTGCGATTCTGCAGCTGTCAGCTGAAAGCATGTCAGTTGCTGCAAGCAAAGGCCGAGACCAACCCAGAGTTTAAACAGTTTGAGAAGAATTGTGTCGCTGATCCTCGAGCGAAGGGTCTTATGCTGAGCAGCTATCTACTGAAGCCTCTGCAGAGAATTTGTAAATACCCACTTCTGATCAGAGAGATTTTAAAATATACACCAGAGAATCACTTTGACAGATCGAGCTTAGAAGCTGCGTTAGAAAAAGCTGAAGAACTCTGCCAACAAGTCAATGACGGCGTCCGCAACCAGGAAAACACGGATCACCTGGAATGGTTGCAATCTCATGTCAACCTGGAGAGTATTGGAGAGCGTTTGATTTTTAACTCTACCACGAACTGTCTCGGTCCGCGGAAACTTCTTCACTCTGGAACACTTTGGAAGGTCAAGAGTGGAAAGGAACTAAAGGCTTTCTTATTCAACGATTTTCTCATGTTGACGCGGCCGCAAAGCTCGCTTGCAGGAAGCTTGTCTAAGAAGATTAAGTTCGAGTCTAGTGATCAAGATGTCATGTATTCAATATACAGGAAGCCTTTGATACTGAATGAAGTGATTGTCAACAAAACTCAGGATATGAACACCGATGACTATGTCTTCCATTTGTCTCACACTGAACAGAATTACGCCTTTCGAGCAGAATCAAAAACTGAAAGAAACCGTTGGCTGGGGTTGATCGAAAAAGCATCAGAGACGTATATTGAAACAGAGAAGGAACTGAGGCAGAAAGTTCATCGAGCGCGATCTTTTCGCACAAATGGAATCGGAAAACTAAAGGTCACTTTGATTGAGGGCGTCGACTTAATCTCCTCAGATCCTAACGGACTTAGTGATCCTTACTGTGAAGTGAGCATGGGCAGTGAAGAGCAAAGGACTAAAGTTATTCCACAAACTCTGAACCCCAAATGGAACTCAACATTAACTTTCACTGTCAAGAGCGTGCAACAAGATGTACTTTGTATAACCGTGTTTGACCGAGATTTGTTTTCTCCAAATGATTTCCTCGGCCGCACCGAAGTTAGCTTAGCAAACCTAGTGGAAACAGGAAAGGGCCCGTGGCACGAACGACTCCTGTTACATGAAGTGGAAACTGGAGAAGTTGTGGTTAACATAGAATTACAATTAATCAGTTAAACCAAGTTGAAATTAACTTGGTTTGGCAGCTAATTACCAAGCCATTGGTTTTTACTGACTAATGTCGATGCTCTCCGGACACGAGAGGTATTGGTGGGGTCACCAACACACAATGTTGGTACAGTGTGCTTTGAAATGTTGGTATTTATGCAATGGTATTTGTATTCAATCTACGGACAGCATTGTGAACAAAGTACGAGTGAGACAGCAGAGAGACTGAGCATCGTAGCGAATAAATTCATAGCATCTTCCTGGTAAATCCGGAAGCGAGATCTCTCCAGAAAAATGCCCACAATTAGATGCTTGCCGACATGAAAAAGTGTCTCAAAATGTCCCCTGTTTCTTTGAGTCAACTTCAACATCATATGGAATACGGAGAATAAGGGTCATAAAGTGTCCTCCCAACTGTAGTGTTGCCCCGCCAACAACCATGGAAACCACTGTTTTTTATAGTAAGGAAATAATGGTGGAGACTTTTAAACAAATTACAATCTACAAGAATACGTACCAACCTGTCAGCACAACTTATGTTTGTGTCGTCAAGTACAACAGCGCGTACGCTGTAAAGAACTGTGTAATATTAGGCTTCTTGGAGTGCATGAGAAAATAAGTCCATGTAATTGTTAGGAGATGTCCATTATAATTTTGAACGGCGATGCGTCGTCGTTTTTGTTGACTTCAGCCTCCTTTCCAGAATGGGTTCAACGGAGTCGAAAACTGAGGCCATAACTGCGTTAACGTTTGCAGTGAATGTTTTAAGATAACTTAACAAATTTGCATGATCCGTAGTAAAAAATTAGAATTGGTGTTGGCGTAGAGAGAATGGGACGTTTCGTAAAGTTAATTTTTGTCAAGCAGTTTGCATTCGCGCCAAATTTAAAAACAGGTCACGGAATTTCCTTGTAGTTTCATAGAAAGTTGGTGAAGTTATGAAAGGGAAATACGTGTTCAAACATTAAGGCCTAGTTTTGCTCATCCTAGTTCTGCAAAACGTTTTTTGTGCTAGTTTCCTAAATAACTTCTTTTAACCCGTAGAAAGTTACGTTATGTTAGCGTTGTGAAAAGACTGGATGAAAAGTAATAGTCAAACAAGATATAGTGGAATTGGTTTGTTTTGTTTTACGCAGATAACGTTGTAAATCTTTAAACAAAGATGTAAAAATAAATTTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O42287	Intersectin-1 OS=Xenopus laevis OX=8355 GN=itsn1 PE=1 SV=2
Q9WVE9	Intersectin-1 OS=Rattus norvegicus OX=10116 GN=Itsn1 PE=1 SV=2
Q9Z0R4	Intersectin-1 OS=Mus musculus OX=10090 GN=Itsn1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002086 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF16652 all species →	PH_13	Pleckstrin homology domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR051480 all species →	Family	Endocytic & GEF Adapter	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46006 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035025 all species →	Biological Process	positive regulation of Rho protein signal transduction	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10478	BTBD3_6; BTB/POZ domain-containing protein 3/6	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.