Detailed information of FUN_011992-T1 in Siderastrea siderea

Genomic Location: contig_9:8347596...8393061
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20168
all species →		PDS5Sister chromatid cohesion protein PDS5 proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039776
all species →		FamilySister chromatid cohesion protein Pds5Interproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12663
all species →		ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0007064
all species →		Biological Processmitotic sister chromatid cohesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11267PDS5; sister chromatid cohesion protein PDS5-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_011992-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
12.8Max TPM
0.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 11.27 12.82
unannotated 1 1 5.31 5.31
live coral tissue/skeleton 1 1 9.03 9.03

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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