Detailed information of FUN_012045-T1 in Dendrogyra cylindrus

Genomic Location: contig_17:5054406...5058038
NR annotation: XP_020624717.1, uncharacterized protein LOC110062187 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
G3XCN6Glycine betaine/proline betaine transporter BetS OS=Rhizobium meliloti OX=382 GN=betS PE=1 SV=1
Q87NG3Glycine betaine transporter 1 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1905 PE=1 SV=1
A0A0B5RUB0Trimethylamine transporter OS=Myroides profundi OX=480520 GN=tmaT PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000591 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02028
all species →		BCCTBCCT, betaine/carnitine/choline family transporterFamilyInterproscan
PF04749
all species →		PLAC8PLAC8 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000060
all species →		FamilyBCCT transporter familyInterproscan
IPR006461
all species →		FamilyPLAC8 motif-containing proteinInterproscan
IPR018093
all species →		Conserved_siteBCCT transporter, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30047
all species →		HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0022857
all species →		Molecular Functiontransmembrane transporter activityInterproscan
GO:0071705
all species →		Biological Processnitrogen compound transportInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006810
all species →		Biological ProcesstransportInterproscan
GO:0016021
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_012045-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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