Detailed information of FUN_012068-T2 in Siderastrea siderea

Genomic Location: contig_9:9116790...9127447
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyUBD|ZnF|NZF · all ubiquitin genes in this species

 Pfam domain
No Pfam domain signature was detected for FUN_012068-T2. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR051644
all species →		FamilyTRAMP complex component and AT-rich DNA-binding proteinInterproscan
IPR001876
all species →		DomainZinc finger, RanBP2-typeInterproscan
IPR036443
all species →		Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46543
all species →		ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0031499
all species →		Cellular ComponentTRAMP complexInterproscan
GO:0043629
all species →		Biological Processobsolete ncRNA polyadenylationInterproscan
GO:0071031
all species →		Biological Processnuclear mRNA surveillance of mRNA 3'-end processingInterproscan
GO:0071035
all species →		Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071036
all species →		Biological Processnuclear polyadenylation-dependent snoRNA catabolic processInterproscan
GO:0071037
all species →		Biological Processnuclear polyadenylation-dependent snRNA catabolic processInterproscan
GO:0071038
all species →		Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071039
all species →		Biological Processnuclear polyadenylation-dependent CUT catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_012068-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_012068-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP