Gene detail

Detailed information of FUN_012236-T1 in Acropora pulchra

Genomic Location: ptg000008l:6621033...6626067
NR annotation: XP_029189872.2, probable ATP-dependent RNA helicase YfmL [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_012236-T1

ATCAATAGTCGATTCGTGAAAACGGTTTCTTCCTGGTTCCGGATGCAGAGTATGCTTTTAAGGCGAGCTAGTCTTCCTAGATTGGCTTCAAGGAACTTAAAAATAAATGTGAGGAACGGTATTCGAATGTTTACTTCGAAACAAGTCAATGATTGCAGTGACGATAGAGGAATATCTGGGAAAAAGAGAAGATCAGCAAAGAAAGCAAAAAATCATATCCAAGACCCTGATGAAGAGTTCATGCAAATGTGGAGCAATACAGAAGGATATATTCAAGATCAAATAAAACAGGCGACATCAGGAATAAGAAAATCGAGACGACAATATGTGAAAGTTTGGGGACAAAATGTGACAACACTGCCATTAGCCAGCGAACTGACAGTGGAGGAAAGAAGAGAACTACTGGAGGATGACATGTCTGTGGAATTTAGAATACCCAAGGCTGGAGATTTCGCGAGTTTATTCCCGGTATACAAATCTTTTAATGGCAATGAAAATGACAGCATTGCGGAAAGCAAAGACGAAGTGGTCAATTTAGATAGTCAAATAACAGCTGAATCCGATGAAGTTGATGTTTCAAACATATCTTCCTTCCAAGACTTTAAACTTCATCCAAAACTTGTGGAAAAGCTAGGACAGCGGGGAATTGAAAAACCAACGCCAATACAAAAGAAAGCGGTACCCTTGGTTCTGAAAAACAAAAGTGTTCTGATTCATTCAGAGACAGGATCTGGCAAAACATTAGTTTTCTTGTTGCCTGCCATCCAGGATCCTGGCAAGGGTTTTGGCACAGTAATCATTGTTCCGACTCGAGAACTGGCAAGTCAAATGCTTTATGAAGCACATAACCTTCTAGGGAACAAGAGTGCAGTGGAATCATTTGTTAGTGGTGTTGATACAGAAAAACAAGAAGCAAGATTGAAAGATCGTGACAACAGACCTTTGATTGTCATTGGTACAGCAAAGAGACTTCTTGAGATTGTTGAAAATGATCCTTTGATTGTACATCGAACTAAGAGAATTATTGTAGATGAGGTTGACAAGGTTCTTCTTCCTCTCAAAAAGCGATCATCACTAAAGAAAGTCATTCTTCGAGAGAATCATCCCAGACCTGCCAAGCTCTTGGTTGAAAAGATCAAAAGGCACTCCAGGGTCAGGCCAGTTCAGCTCATAGGAGCTTCTGCAACTGTCAATGACGAGCTGAAGGAAGATTTGAGTGAACTTGGTTGGGGAGATCATGTAACTGTCATCCAGTCACCTTCATTCGAGGGAAAGCGCCGTAACATTCCATCCTGTATCAAACACCAGTTTGTTGTTTTTGATGACTCTTTTGGAGGGACCAAAGCCCAGACTCTTGCAAGGATTTTCAGAGAATCGAATCAAAAGGCTGCCCTGGTGTTCGTTCACCGACTTCATTCTATTGACAGCTTTGTTTGGGAGCTGCGGGACTTGGGCTTAAATGCTGTAGCTCTCTATAAGAAAGTTGCAGACCAAAATCCTGAACAATTTCAGGAATTTCTTGAGCAGTTTCGGACTGGACAAATTGAAATTGTGGTTGGAAATGAGGAAACAGTGAGAGGTTTAGACTTCAAAGAATTGGATCATGTTTATCTGATGGAAGTTCCAAAGGATGTTGATGAGTACCTGCATCTTGCAGGAAGAGTTGGTCGCCAAGGAAGACCAGGGACTGCAACCACTATGGTGTCCACAGGGGACCCAAGAGATGAACGTAGAATAAAACTGGAATACAAAAGGCTGGAATTGCCATTTGAAGAAATAATTCTGGATGATGATTTTTAAGGAATGTGTAATGTAAACAAAACTTTTTAAAAATAAAATTTGAAAGAAATCATCAATATTTGAAAACACATTTCAAGATTCAATCCATGTTTTTTGCAGCTGTTGCATATTTTAATGGACAACAAAAAACAAGCCCTTGAGATTTCTCCTTTATTGTTTGGTTATCATTTCTGATAAGAATCGCCAAATCCTGGTCTAATTGCCTTCTGCCTGTTCTGAAACTCAAGTTTCCTGCCCACAGCACTGAGCTGAGTATCCAGGATGCAGCAGGGCTTCTGCATTAAGGTGGCTTACTACAGTTTTATAAGGGTTCAAGAGGTGTATACCATAAATGTGCAAATTTAATTTATTTTTTTGCATCAATATTCTGATAGCAAATAAAACCCCCTATATGAGACAATTGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2FY15	DEAD-box ATP-dependent RNA helicase CshB OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=cshB PE=3 SV=1
Q9C718	DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana OX=3702 GN=RH20 PE=2 SV=1
Q81DF9	DEAD-box ATP-dependent RNA helicase CshE OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=cshE PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008567 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR050079 all species →	Family	DEAD box RNA helicase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959 all species →	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12858	DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.