Gene detail

Detailed information of FUN_012237-T1 in Acropora pulchra

Genomic Location: ptg000008l:6626384...6641622
NR annotation: XP_029189986.2, cytochrome b-245 heavy chain-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_012237-T1

TCTACCTGTTGAACACATTTTAAAACAGTTTTACATCGATTGATACCCACAGATCCACTTAATTTACAATTGTTTGTAATATTTCTCTCTTTTTTCATCACCCTTGCGAGTAGTGTCTAAATATTAACCCTGAAACGAATACATTTCACGCTTCGGCTCATTGCAGACGAGGAGGCAGCCAAGCAGAGAGGATTATTGAATTATGAGGCTTTCAACAATTGTTTTGTTTACAGTGCCGAAGTGCACTTGTTGAGGATGAGTTGAGTTTTCGGCATCTCGTGAATTCTGCCGGCTGGAAACCGAAAGGTGCTATATAAGCACTTTTTGTTGCGATTCCGGTCACCATTTGTAAGGTCTGAATTCATCGGAAATCAAAAATGGGCTTCTTGCATTTCTCCCGTTACGACATCTCTAGATACGTATTCGTGATGTTATGGATGACAATCAATGTTATACTTTTTTTAACCACCTATATGAATTATGGAACATCAAAGAAGTATACTTATTTGAGAGTAATAGTCAAGGGTGGTTTACCCTATGCTCGTGGTGCTGCAATGGTGTTGAACTTTAATTGTATGTTGGTGCTACTTTCCATGTGTCGTAATATCATCTCTTTCATCAGAAGTAACCTTATTTGTGGTTGGTGTGGAGATTTTGTACGGCTGTTGGACAAAAACATAACTTTTCATAAGTATTGTGCATATACAATTTGCTTCTTCACCATTGTTCATGTGTGTGGACACTGTTTTAACTTGACAAATCTAACAGAAAGCTTTTCACAAGATGTGTCAAAGCTGGAACAACGCCTTAGTCAGCTAGATGATCCATGGATCAATCCTATTAGAGAGTCTGGATTGGATCCTGTAACTGCCCTGTTTAAAACTGTTGCTGGAGTATCTGGTGTTATCATGACAATGTCCTTAATCCTTATGGTGTCATCAGCAACTGAACTCATAAGGAGATCATACTTTGAGACTTTTTGGTTTACCCATCACTTGTTTATTGTGTTCTTTGCTTGCCTGGTAGTGCATGGAACTGGGAATCTGTTGCGTTACCAAACCAACATGAATGAACATGATCCAGAGATTTGCAAGGATTTAAAGCTTTGGGAAAATCATACTCATCCTTGTTATTTGATCAGGCCACAATTTGCCACTTCTGCGGCAATGACGTGGAAGTTTGTTATATTTCCAATAATTTTGTACTGTCTGGAGCGTCTCCTTAGAATCTTCAGATCCTTTCAGAAAGTCAAGATACTAAAAGTTATTAAGCATCCCTCAAAGGTGCTTGAGATTCAAATGAAAAAAGAAGGTTTCAGTTGTGAAGCTGGCCAGTACATTTTCATAAAGTGTCCAAAAATTTCAAAGCTGGAATGGCATCCATTCACTCTGACATCTGCCCCAGAGGAGTTTTATTTTAGTGTTCACATCAGAGATGCTGGAGACTGGACAAATAGATTGCACAAGGAATTTGATCAAAACATTGGAATGAAAGATATTACAGATTGTCCCAAATTGGCGGTGGATGGTCCCTTTGGAACATCAAGCACAGATGTTTTCAAGTATGATGTTATTATGTGCATTGGTGCTGGAATTGGAGTCACTCCTTTTGCTTCAATTTTGAAATCAGTCTGGTATCGGCATAACCAAGGAGTTGATGACCTTAAGATCAAGAAAGTCTACTTCTTCTGGATCTGCCGAGACACAAATGCTTTTGAATGGTTCACAGATCTCCTTAGGCACTTGGAAATTCAAATGACTGAAATGAAGAAACCTGACTTTGTGGAATGCAACATTTACCTTACAGGCTGGGACAACAAATTGGCGATAGAGTCTGCCCTGCACCAGGGGGCTGAGGATAACATTACACATCTGAAGGCCAGAACTAATTATGGCAGACCAAAGTGGGATGACATTTTTAAGAACATTGCAGGCAACCATAAAGGAAGGGAGATTGGTGTATTCTTTTGTGGACCAAGTGTTCTATCACATGTTCTTCACAAAATGTCAAATCAACACAGCAACCCGGCCACTGGTGTCAAATTTTGTTACAACAAGGAGAACTTTTAGACATAAATGAGAAATAGTGTTCAATTATGCAATGAAACTTTTGATAACAAGAGAAAAGTTTGACATGGCATTTGTGGCTTCAGCAGCTTCAAATTTAAAAGTTTGGTCGCCATACCTAGTGTCTGTAAACTGTGACTTTTTCATGTAGTTTTTCCGATATCAGCAGTTTCAATAAATAAAGTTGCAGAATTATTTAAAAAGGAAGAAATGTCTTCATCCCCAATGTTGTTACACTACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P52649	NADPH oxidase 2 OS=Sus scrofa OX=9823 GN=CYBB PE=2 SV=3
Q61093	NADPH oxidase 2 OS=Mus musculus OX=10090 GN=Cybb PE=1 SV=1
Q8CIZ9	NADPH oxidase 1 OS=Mus musculus OX=10090 GN=Nox1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000994 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01794 all species →	Ferric_reduct	Ferric reductase like transmembrane component	Family	Interproscan
PF08030 all species →	NAD_binding_6	Ferric reductase NAD binding domain	Domain	Interproscan
PF08022 all species →	FAD_binding_8	FAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050369 all species →	Family	Respiratory burst oxidase/Ferric reductase	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR013130 all species →	Domain	Ferric reductase transmembrane component-like domain	Interproscan
IPR013121 all species →	Domain	Ferric reductase, NAD binding domain	Interproscan
IPR013112 all species →	Domain	FAD-binding 8	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR000778 all species →	Family	Cytochrome b245, heavy chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11972 all species →	NADPH OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006952 all species →	Biological Process	defense response	Interproscan
GO:0016175 all species →	Molecular Function	superoxide-generating NAD(P)H oxidase activity	Interproscan
GO:0042554 all species →	Biological Process	superoxide anion generation	Interproscan
GO:0043020 all species →	Cellular Component	NADPH oxidase complex	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21421	NOX2, GP91, CYBB; NADPH oxidase 2	EC:1.-.-.-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.