Detailed information of FUN_012263-T1 in Siderastrea siderea

Genomic Location: contig_9:11952604...11959524
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04184
all species →		ST7ST7 proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007311
all species →		FamilyST7Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12745
all species →		SUPPRESSION OF TUMORIGENICITY 7Interproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_012263-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09470puuA; gamma-glutamylputrescine synthaseEC:6.3.1.11
Arginine and proline metabolismko00330deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_012263-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
77TPM > 0
7Conditions
1,634.1Max TPM
622.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 19 760.04 1,287.54
holobiont · low.pH Control.temp 20 19 596.55 1,629.24
holobiont · control.pH_high.temp 20 17 642.53 1,634.07
holobiont · control.pH Control.temp 19 16 672.15 1,602.41
Whole organism 4 4 28.76 31.05
unannotated 1 1 27.13 27.13
live coral tissue/skeleton 1 1 20.76 20.76

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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