Gene detail

Detailed information of FUN_012276-T1 in Colpophyllia natans

Genomic Location: contig_18:1173369...1182101
NR annotation: XP_020608868.1, carbohydrate sulfotransferase 5-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_012276-T1

GGAgtaaacttcgcactgatttaAGTCTTCCTTTATAGCAAATCCGCTAGGTCCCCCTATGGAGCGTGACTCGTAAATTTACCAACTAAAGTGTTATTATTCCTGAACACATACGGACATCAAGCAGAGGTTTACAAAACTGTAAACAGAGCCGACTTTCCGCTTTCCTTGGAAACGGTATCTACGAAAGACCACCTTCAACGCCTCAGAGAGTAGTATAATTGAACGTACCAAAGTCAGTTGAAAGTGCCTAGCTTATTGCTTAAAAACTCAGCGACATGTCTGTAGTTCGATGGACCAGACCAAAAAAATTACTCAAGTCCAAACGGTTCTGGATGTGTTTGATTCTTGTGCTATGTTTAACTTGGGTCTATTTCTTTGGCTTTTTAACGAAGCCTCGTGAATTTAATGAAATACATGTGCAGCAGCTGCAACCTATAGCGaccgcaacctcgttcccagggacttttccctggcttgagGGAGAAgtctctgggaacgaggttgtagcgACCGGACAGGAGTTTACCGAGCACAAAGAACCACTTGCTGATAAAGAACGAACGGCGCGGAAAAACCTCATCATTGTGTCGCATGGTCGCTCAGGATCCACACTGACAGGCGATATTTTCAACCACCATCCTTCTGTGTTTTACATGTACGAGCCATTACAAACGCCAAAGCGAGTTCAGGAAAACAAGAAGATGAATGATTCGGGATACAGCAACCTCGCCAAGGAGTTTCTGACCGGCGTATTTCGCTGTAAGTTCAATAACCCAGATCTCTTGCGTGATATCGAACGGTATTACCGAAAACCCCAGCACCCGCGCATAAGCAAGGCTATTGGATCGCCTCCATTGTGCCCTCATCAAATGACAGACCCAAAATGGAATCCGAAGCATTGCTTGCCCATGACTAACGAAGTATTGGGAAGTGCTTGTAAGGAAACTTATAATTTAACTGTTCTTAAAATTCTAATGTGGCGCATTCCTGAGAATAGCATTGAGACCATTTTGAATGCTTGCAGTGCCCCTGATATTGACTGCAAGGTTATCTTTCTAGTTAGGGACCCTCGCGCCATGGTCCCGTCCTCGCGAAAAAGCGCATTCTTCGAAGAGCAAGGACCTCCGAATGAGTATTTGGGAACGCGTCTCTACAGTCAACAGCGATGTGCACAAACAGAGGCAAACATGGAGTTAGTCAGAAGTCTACCGGATTCTTTCAGGGATCGGATCAAACTACTTCGATACGAGGATCTGGCAACAAAACCGCTCAAGGTGCTAGCAGACATTTACGAATTTGCTGGGTTACCTGTATTAGAGAGCGTGCGCACGTGGTTGAACAAAACCACGCATTTAAGTAGGAGCGCCTGTAATCATTTGGACGGAGTCTCGGTCACGTGTACTAAGGATGATGCATGGGCCGCGGCAAATCGGTGGAGATGGACCGCACGTCTGCGAGAAATTAATGTTATTGAACGCTACTGCGGACGCGTGCTACGTCTTATGGGATACAGGCCAGTGAATGGTTCGACAGAGCTACTGGCAAACCGTAATATCGCTCTCTTTAGTAATGACTATGAAGCTAAACATTGGTTTTTGCATTAAACGAAATTAACGCGACGCTAGCAACTGCAATTCAATTCTATATTTACACTACATGGAGcattaaaaaacattttatgcgGTCAAGTACTAAACTAACATAGTAAGATACTAAAAATACTAAGTCGTACATTTTTAAACTCATTTTACGGGAACTTGCACTCTAAATAGAACTTGGCTAATTATCTCCTTATTTAGGAATTTCATATTTATTTCGTTCAGTTTCTCGCATTGAAACTGGAACGTCTAAAAGAATCAAAGCCTCTAGAGAATTAAATCGTTTCtgaaaattaaccaatcacCCCAGACCCCGATATATCGTGTTTTGCCGCATCATGTTGCAATGAACCAAAAGGCAGTTTTTACCTCGGACGTGCATTCTTTATTTTGTAAGACAAACTAAACTCCAGGCCCCTGTTGGTCGAATGGTAGATAACGTTGTCTTCTtctaaagccccggccaaacgatcgcaacatgtcaacgcaacatatcgcaacattgttgggcgcaacatgtcgcgtgcgt

Protein

Uniprot

Uniprot term	Description
Q9QZL2	Carbohydrate sulfotransferase 3 OS=Rattus norvegicus OX=10116 GN=Chst3 PE=2 SV=2
O88199	Carbohydrate sulfotransferase 3 OS=Mus musculus OX=10090 GN=Chst3 PE=1 SV=1
Q6XQG8	Carbohydrate sulfotransferase 7 OS=Rattus norvegicus OX=10116 GN=Chst7 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13469	Sulfotransfer_3	Sulfotransferase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051135	Family	Gal/GlcNAc/GalNAc Sulfotransferase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10704	CARBOHYDRATE SULFOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001517	Molecular Function	N-acetylglucosamine 6-O-sulfotransferase activity	Interproscan
GO:0006044	Biological Process	N-acetylglucosamine metabolic process	Interproscan
GO:0006790	Biological Process	sulfur compound metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01022	CHST1; keratan sulfate 6-sulfotransferase 1	EC:2.8.2.21	Glycosyltransferases	ko01003	deepkoala