Detailed information of FUN_012284-T1 in Siderastrea siderea

Genomic Location: contig_9:12227406...12279442
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13637
all species →
Ank_4Ankyrin repeats (many copies)RepeatInterproscan
PF12796
all species →
Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00023
all species →
AnkAnkyrin repeatRepeatInterproscan
PF07693
all species →
KAP_NTPaseKAP family P-loop domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002110
all species →
RepeatAnkyrin repeatInterproscan
IPR036770
all species →
Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR011646
all species →
DomainKAP family P-loop domainInterproscan
IPR052771
all species →
FamilyNeurotrophin-activated signaling adaptorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24116
all species →
KINASE D-INTERACTING SUBSTRATE OF 220 KDAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0019887
all species →
Molecular Functionprotein kinase regulator activityInterproscan
GO:0030165
all species →
Molecular FunctionPDZ domain bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12460KIDINS220, ARMS; ankyrin repeat-rich membrane spanning protein-Neurotrophin signaling pathwayko04722deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_012284-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
40TPM > 0
7Conditions
67.8Max TPM
9.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 7 6.12 41.66
holobiont · low.pH Control.temp 20 8 9.53 39.31
holobiont · control.pH_high.temp 20 8 6.77 44.93
holobiont · control.pH Control.temp 19 11 13.69 67.77
Whole organism 4 4 24.05 27.64
unannotated 1 1 11.79 11.79
live coral tissue/skeleton 1 1 14.22 14.22

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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