Gene detail

Detailed information of FUN_012363-T1 in Acropora pulchra

Genomic Location: ptg000008l:8272056...8276706
NR annotation: XP_015756115.1, PREDICTED: LOW QUALITY PROTEIN: prostaglandin reductase 2-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_012363-T1

AGTCCCTTGTGATTGCGAAAAGAAGATGGCGGCAGAAGTAGTCGAAAACAGCTGTGCATGTGTCATTTTACAATGTCGTCCAGGGGTGGAGAACGAACCAGCCGAAACCAACTTTGCCGTGAAAACTATGGAAGTTCCACTGATCAACGAAGGACAATTTTTAGCGAAGACGCTGTATTTATCTGTTGATCCATACATGCGATGTCTAATGAATGAAGATTCAGGCGTTGGGTATCTCACTTCTTGGGACCTTGGCAAACCTCCCAGCGGCGGAGGGGTAGGAACAATTGTCAAGAGCAGATGTGAAAGTTTTCAAGAAGGAGATATTGTATACTCATTTCAGTGGCCTTGGCAAGAACTCGTAGCGTTTTCTGGTAATGATGCTCAGCTAAGCAAGGAGAAAAGTGCTTTCTTGTGCTCCAACCCTTCTCTCTTGTTGGGGATTGTTGGAATGACAAGTTTGACCTCTTTCCTGGGTATCAGGGAGAAGGCTCACATTACACCTGGTGCAAACCAATCAGTGGTTGTCAGTGGGGCTGCAGGGGCTTGTGGGATGGCAGCAGGGCAGATTGCCAAGTTGGATGGTTGTGGAATTGTTATTGGAATTTGTGGCACAGATGAAAAATGTTGCTGGCTTACAGATGAATTGGGCTTTGATTATGCAATAAACTACAAGACAAGCAAGAACATTAGAGAAGAGATAAAACTCAAGTGTCCAGCAGGAATTGATGTGTACTTCGACAATGTGGGTGGTGAAATAAGTAATGAGGTGATTCGCTGTATGAATCCGAACAGTCACGTTGTTCTCTGTGGCCAGATCTCACTATACAACAAGGATATCCCATATCCGCCCCCCATTCCTGACGACGTACAGGAGCAGCTTCGCATTAAAAACATAACACGTGACCGCTTCCTGGTTCTTAATTACATGGAAAAATTCGCCAGTGCAAAAGAGCAATTGGAGGCCTGGGTTCAAGAGGGGAAGTTAAAATATCGTGAAACAATCGCGAAGGGCTTGGAAACTACTGGTTATGCGTTTGTGTCAATGATGAGAGGCGGAAATATTGGAAAACAAATTGTAAAAGTTGCTCAAACCATGTGATTGATTATAGAAATGTTCCTTTGCTTTCACTTCCTCCGTGTTGGTACTTGGATTACGTATGGAATACCTCAACGTTGAAGTCAGCGAATTCTTTATTCTTTTCTTTTTGATAACTGCAAGGATCATAGCTTACTTTATTTTTTTTTTATAGGATAGTCACCAATAATATTATTTATAGACTACTCCCAAGAGGTACGTGTCTTTCGGCTGGAAAGGCTTAAATGTGAAGTATGGACAACAAATTCCAAAGCAACAGGTGCCACACTTGTGATAGGAGTGAATCTGAAAATCCGCTTGTTCGTTTTCTAAAATTAAAAGTACACGAAGTGTGGCTTATATTGGACTCTTAAAAAAAGTTGCTAGCCCAGGCCCCTTACCTATCAGTTTAACAAGTTCCACTTGTGTAGGCAAACCTGTTGGATGTCATCTTCAAGCGCAGCTAAAGTGTCAAGCTGGGGATAGGAAGCCTTAGGAAAGACACCGGCGACAAAGAAAGCGACGAAAAAGTCACTTGAAACTAAACATTTGCACATTTATGACTATCCTGCGATTGTCTCATCTTGTTCGCATTCTTCGATGTTGACAGAGGCTGGTGTGCGCGTCGGTGAATTAAATACAGGAAATGAAAGATTTACGGTTGTTTGCTCAAGATTTTATTAAACCCACAATGTGGTAATTTCACGTTGTTTTGTTTTGCATCGAATTTTTCTAAAGTGCGTGCCGCATGTGCAACACGCTTAGTTTTCCTCACACGACCAATCAACTGCTTAATTTGTGGCGTTGTCGTCGATGATCAAGCTGCACATTAGGGAGTTTAAGAAATGACGACGGCATAGGCAACGACAACGCCACAAATCAATGCTCTGATTGGTTGAACGAAGAAAAATAATCGTGCTGCACGTGCGGCACACTTTCTGTTGAAAAATTTTGACGTACTCTGTCAAACGACGTGCAATTTTAATTTTTGAGGTTCTGTCGACATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32L99	Prostaglandin reductase 2 OS=Bos taurus OX=9913 GN=PTGR2 PE=2 SV=1
Q5BK81	Prostaglandin reductase 2 OS=Rattus norvegicus OX=10116 GN=Ptgr2 PE=2 SV=2
Q5R806	Prostaglandin reductase 2 OS=Pongo abelii OX=9601 GN=PTGR2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002336 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16884 all species →	ADH_N_2	N-terminal domain of oxidoreductase	Family	Interproscan
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR041694 all species →	Domain	Oxidoreductase, N-terminal domain	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR045010 all species →	Family	Medium-chain dehydrogenase/reductase	Interproscan
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43205 all species →	PROSTAGLANDIN REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006693 all species →	Biological Process	prostaglandin metabolic process	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan
GO:0047522 all species →	Molecular Function	15-oxoprostaglandin 13-oxidase [NAD(P)+] activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13949	PTGR2, ZADH1; prostaglandin reductase 2	EC:1.3.1.48	Arachidonic acid metabolism	ko00590	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.