Detailed information of FUN_012436-T1 in Siderastrea siderea

Genomic Location: contig_9:14355379...14401996
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00168
all species →
C2C2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035892
all species →
Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008
all species →
DomainC2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21254
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005814
all species →
Cellular ComponentcentrioleInterproscan
GO:0034451
all species →
Cellular Componentcentriolar satelliteInterproscan
GO:0060271
all species →
Biological Processcilium assemblyInterproscan
GO:0061511
all species →
Biological Processcentriole elongationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16751C2CD3; C2 domain-containing protein 3-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_012436-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
19TPM > 0
7Conditions
40.2Max TPM
3.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 4.10 28.00
holobiont · low.pH Control.temp 20 1 0.64 12.85
holobiont · control.pH_high.temp 20 6 6.63 27.71
holobiont · control.pH Control.temp 19 1 2.12 40.21
Whole organism 4 4 5.40 6.15
unannotated 1 1 3.07 3.07
live coral tissue/skeleton 1 1 4.62 4.62

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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