Detailed information of FUN_012516-T1 in Acropora pulchra

Genomic Location: ptg000008l:9550737...9552172
NR annotation: XP_015759995.1, PREDICTED: E3 ubiquitin-protein ligase parkin-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9P3U4E3 ubiquitin-protein ligase dbl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbl4 PE=3 SV=1
P36113E3 ubiquitin-protein ligase HEL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HEL1 PE=1 SV=1
Q1L8G6Ankyrin repeat and IBR domain-containing protein 1 OS=Danio rerio OX=7955 GN=ankib1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002539 (this species only)
Ubiquitin familyE3|E3 activity|RBR · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01485
all species →		IBRIBR domain, a half RING-finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002867
all species →		DomainIBR domainInterproscan
IPR031127
all species →		FamilyE3 ubiquitin ligase RBR familyInterproscan
IPR044066
all species →		DomainTRIAD supradomainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11685
all species →		RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0031624
all species →		Molecular Functionubiquitin conjugating enzyme bindingInterproscan
GO:0032436
all species →		Biological Processpositive regulation of proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_012516-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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