Gene detail

Detailed information of FUN_012561-T1 in Acropora pulchra

Genomic Location: ptg000008l:9919992...9932307
NR annotation: XP_044178180.1, X-linked retinitis pigmentosa GTPase regulator-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_012561-T1

ATGGCTTCGGACGACGATGATGTGCCAGATTCTGGAGCAGTGTTTACCTTTGGGAAAAGTCGTTTCTTGGACGACAAGTTCTGGATACGCGACGATGCGGTTGTACACCTTGCCTGTGGAGACGAGCATTCTGCTGTAGTTACAGAAAGTGGAAAACTTTACACATTTGGGAGCAATGATTGGGGTCAGCTTGGTCATGGGAACACAGTTCAACTTTCTCGTCCTAAGCTTGTAAAACTTCTAAAGCCAGATAAAGTAAAACTAGTTGCTGCTGGTAGGAATCATACAATTGTGTCAACAGAATCAAGAAACCTATTCAGTTTTGGTTGTGGAAGTGAGGGCCAGTTGGGGCATGGTGACTGTAAGAATTCTAATGTGCCTAAAGCAATAGAAGCCTTGTCTGACCAATTATTCAAGATGATTGCTTGTGGATCAGAGTTTTCTGCTGTAATAACTGAGCAAGGACAGCTGTACACATGGGGATCAAGCAGTGAGGGACAAACCAGTCACGGTGATAAAGACTGTGATGTGCCGACCAAAGTACAGCTGAGGTTCAAAGCAGTGGCAGTGGCTTGTGGTTATTATCATATGGCTGTAGTTTCTGAGGATGGGTCATTGTTTACTTGTGGAGAAAATGAAAGTGGAAAACTTGGACTAGATGACTCTAAACTGGGAGATACTTCTCATCTTCAAAAAGTCAACATAAATGAACATGTTATCTCTGTTGCTTGTGGTGGTAATCATACAGCAGCTGTTACAACTTGTGGTAAATTGTTTACTTTTGGACAAGGGGACCATGGCCAACTTGGTCATGGCTCTTTATGTTTAGAATGCGATTCTCCCAAGCAAGTGGCGCGTCTAGAAACTATAAGAGTCAAACATGTAACCTGTGGCGAATCTCACACAGCAGTTATAACAAAACATGGAAATCTTTACACTTGTGGAGATGGTCGACATGGAAAGCTTGGCATGGGAGAGGAATCATTCTCCAACTTATTCAAATTTGAAAAGGTTGCACGGTTTGATGGCTTTACAGTACAAAAAGTGGCATGTGGTGGATGTCATACACTTGTCACAGCATTCAAACATGCTGACATAAATAGTGAAACAGACAGTGAAGCTGAAGCAGAAAAAGATATTCTAGCAGCTTCTGTTTCTTCAACCAAAAGTCTTAATGATGTGGTGGATGGACCTGCAGGATTTAGTGGTTCAGCCACCTACCCTGCTGGTGGAATGGCCAGAAATAAGCGTCGACAGAGAAACATAGAGAGCCTTGGTAACTCATTAGGAGGCTCTTTACCTCCAATCAGCAAATCAAATTTACCGCCGCTACCAAGATCACTCCCTACATTGAAAAGTGAAACATTAAGGGAGGAAGAGAAGGTACCAGTTAACCCCCTGGATATGTCGACCTTGCCCAAAATATTAAAGGAAAGTCAAGGAAGTTTGAAACAAAAGGATGAAAGTGTAACTGGAAAAGATGCCATGAAGATCATTGAGAACAAAAAACAACCAAAGGATGCGGAGAGCTCTTCCGGAATCTCAGAGAGTGAGGAAGAGGAAGAAGACGAAGAAGAGGAAGAAAAGCACAATTTACAAGAGAAGGACAAAGCAGAGAAACCACTGAGTCAGAAGGATGATGTATTAAGAAAGGATGAAGAATCAGAAGAGTCTCTGACGCAGGATGAGAGTGAGAGTGAAGACGCGTCTACGAAACAACAAGGATCAAGGGAAGCTGGTGCCACATCCCACAGCTCTAAAAGTAAAGACAACGAAGGGAGCAATGAAGAATCAGTTGATGAAGAAGATAGTGAAGAGGAGGAGGAGCAGGAGGAGGAGGAGGGTGACACGGCTGAACTCATAGGACAAGGACGTGGCGAGAAGGAATTAATGAAAGTAGTCGGCAAGACTAGAATGCCCCGGACTGAGGAAGGGAAAGGCGGAGACGAAGAAAGTGACGACGGCGAGGACTCTGAGGAAGAGGAAACTGACGAGGAAGACGGTAAACTCCGCAACAAGGAACAACAGAAAGACAAAGAAACCGAAGATGATAACGACGAAGAGGAGGAAAGTGATGAACAAGATAATGATGATGATGTTGTCAAAGAAAAAGAGAGCAAAAAAATGGTGGCCACGGACGAGACGAAAAAACAAACGACACCAGAACAAAATGTTCAAAGTGAAGATAAGAGGGGCAAGAAGAAAAAGGACAAAAAAAAGAAGGATAAAAAGTCTCAGAAGGAGGAGGAGGATGGAGAGAAAGTCAGTGAACATGAAAACGCAGTCAGGGAAGAAGAAAATAGCGCAGGACAAGAAAACCACGAAGAGGACAAAAATAAAAATGAATCTAGTAATCCTGTTGCTGCGAAGACAAAAGACAAAAAGTCAGGCGTATGTTCCATTCTTTAA

Transcript

FUN_012561-T1

ATATGATCTGCCTCAGTGTAAAAGGCAATAGTGTGATATCCGTTGGTCCGACTTCGGGTAGATCTTGCCTGTTTATATTTTGAAAACTCAAAGCACCTCAAGCAAGCCAAGCACGAAAGGCAGCAAGAAGAAGCAAACCAATCAGCAAGGAAGTGGACAGATATCTACGGAATCTACGGTGCATCATATGTATCCATACACCAAGTAGCACTACACCTTGGAGACAAAATGGCTTCGGACGACGATGATGTGCCAGATTCTGGAGCAGTGTTTACCTTTGGGAAAAGTCGTTTCTTGGACGACAAGTTCTGGATACGCGACGATGCGGTTGTACACCTTGCCTGTGGAGACGAGCATTCTGCTGTAGTTACAGAAAGTGGAAAACTTTACACATTTGGGAGCAATGATTGGGGTCAGCTTGGTCATGGGAACACAGTTCAACTTTCTCGTCCTAAGCTTGTAAAACTTCTAAAGCCAGATAAAGTAAAACTAGTTGCTGCTGGTAGGAATCATACAATTGTGTCAACAGAATCAAGAAACCTATTCAGTTTTGGTTGTGGAAGTGAGGGCCAGTTGGGGCATGGTGACTGTAAGAATTCTAATGTGCCTAAAGCAATAGAAGCCTTGTCTGACCAATTATTCAAGATGATTGCTTGTGGATCAGAGTTTTCTGCTGTAATAACTGAGCAAGGACAGCTGTACACATGGGGATCAAGCAGTGAGGGACAAACCAGTCACGGTGATAAAGACTGTGATGTGCCGACCAAAGTACAGCTGAGGTTCAAAGCAGTGGCAGTGGCTTGTGGTTATTATCATATGGCTGTAGTTTCTGAGGATGGGTCATTGTTTACTTGTGGAGAAAATGAAAGTGGAAAACTTGGACTAGATGACTCTAAACTGGGAGATACTTCTCATCTTCAAAAAGTCAACATAAATGAACATGTTATCTCTGTTGCTTGTGGTGGTAATCATACAGCAGCTGTTACAACTTGTGGTAAATTGTTTACTTTTGGACAAGGGGACCATGGCCAACTTGGTCATGGCTCTTTATGTTTAGAATGCGATTCTCCCAAGCAAGTGGCGCGTCTAGAAACTATAAGAGTCAAACATGTAACCTGTGGCGAATCTCACACAGCAGTTATAACAAAACATGGAAATCTTTACACTTGTGGAGATGGTCGACATGGAAAGCTTGGCATGGGAGAGGAATCATTCTCCAACTTATTCAAATTTGAAAAGGTTGCACGGTTTGATGGCTTTACAGTACAAAAAGTGGCATGTGGTGGATGTCATACACTTGTCACAGCATTCAAACATGCTGACATAAATAGTGAAACAGACAGTGAAGCTGAAGCAGAAAAAGATATTCTAGCAGCTTCTGTTTCTTCAACCAAAAGTCTTAATGATGTGGTGGATGGACCTGCAGGATTTAGTGGTTCAGCCACCTACCCTGCTGGTGGAATGGCCAGAAATAAGCGTCGACAGAGAAACATAGAGAGCCTTGGTAACTCATTAGGAGGCTCTTTACCTCCAATCAGCAAATCAAATTTACCGCCGCTACCAAGATCACTCCCTACATTGAAAAGTGAAACATTAAGGGAGGAAGAGAAGGTACCAGTTAACCCCCTGGATATGTCGACCTTGCCCAAAATATTAAAGGAAAGTCAAGGAAGTTTGAAACAAAAGGATGAAAGTGTAACTGGAAAAGATGCCATGAAGATCATTGAGAACAAAAAACAACCAAAGGATGCGGAGAGCTCTTCCGGAATCTCAGAGAGTGAGGAAGAGGAAGAAGACGAAGAAGAGGAAGAAAAGCACAATTTACAAGAGAAGGACAAAGCAGAGAAACCACTGAGTCAGAAGGATGATGTATTAAGAAAGGATGAAGAATCAGAAGAGTCTCTGACGCAGGATGAGAGTGAGAGTGAAGACGCGTCTACGAAACAACAAGGATCAAGGGAAGCTGGTGCCACATCCCACAGCTCTAAAAGTAAAGACAACGAAGGGAGCAATGAAGAATCAGTTGATGAAGAAGATAGTGAAGAGGAGGAGGAGCAGGAGGAGGAGGAGGGTGACACGGCTGAACTCATAGGACAAGGACGTGGCGAGAAGGAATTAATGAAAGTAGTCGGCAAGACTAGAATGCCCCGGACTGAGGAAGGGAAAGGCGGAGACGAAGAAAGTGACGACGGCGAGGACTCTGAGGAAGAGGAAACTGACGAGGAAGACGGTAAACTCCGCAACAAGGAACAACAGAAAGACAAAGAAACCGAAGATGATAACGACGAAGAGGAGGAAAGTGATGAACAAGATAATGATGATGATGTTGTCAAAGAAAAAGAGAGCAAAAAAATGGTGGCCACGGACGAGACGAAAAAACAAACGACACCAGAACAAAATGTTCAAAGTGAAGATAAGAGGGGCAAGAAGAAAAAGGACAAAAAAAAGAAGGATAAAAAGTCTCAGAAGGAGGAGGAGGATGGAGAGAAAGTCAGTGAACATGAAAACGCAGTCAGGGAAGAAGAAAATAGCGCAGGACAAGAAAACCACGAAGAGGACAAAAATAAAAATGAATCTAGTAATCCTGTTGCTGCGAAGACAAAAGACAAAAAGTCAGGCGTATGTTCCATTCTTTAAGAATAGAAGCAAAAGAAGTTCAAGTTGAATGACATTTTTTGGCTCAAAGTTTTAGCTTTTATATTTCCCCTTGTGTGGCTGTCCATACATTAAAGGCTTTTTTTCCTTCCCTATATATGTCTTTTGAGAAATTCCTTTGTAATCAATGAAATTGTTTCAAATATTTTGCTCTTGGAACTTACATGAAAACGATTGTAAAAACGATTGATTGAAGAGAAACTGTTTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92834	X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens OX=9606 GN=RPGR PE=1 SV=2
Q9R0X5	X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus OX=10090 GN=Rpgr PE=1 SV=2
Q9N1T2	X-linked retinitis pigmentosa GTPase regulator OS=Canis lupus familiaris OX=9615 GN=RPGR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR051553 all species →	Family	Ran GTPase-activating	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45982 all species →	REGULATOR OF CHROMOSOME CONDENSATION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19607	RPGR; X-linked retinitis pigmentosa GTPase regulator	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.