Detailed information of FUN_012681-T1 in Colpophyllia natans

Genomic Location: contig_18:5642167...5721815
NR annotation: CAH3031037.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P49746Thrombospondin-3 OS=Homo sapiens OX=9606 GN=THBS3 PE=1 SV=1
Q03350Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2
Q9R0G6Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 GN=Comp PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF05735TSP_CThrombospondin C-terminal regionFamilyInterproscan
PF02412TSP_3Thrombospondin type 3 repeatDomainInterproscan
PF12947EGF_3EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028974Homologous_superfamilyTSP type-3 repeatInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR008859DomainThrombospondin, C-terminalInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR003367RepeatThrombospondin, type 3-like repeatInterproscan
IPR017897RepeatThrombospondin, type 3 repeatInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR024731DomainEGF domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10199THROMBOSPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

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