Gene detail

Detailed information of FUN_012690-T1 in Acropora pulchra

Genomic Location: ptg000008l:11405372...11421193
NR annotation: XP_029212716.2, cationic amino acid transporter 2-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_012690-T1

AGTTTGATGCCATTAGAAAAGAAGAGCGAAAATTTGTTACAGGAGGAACTTTTATATAAAATGAATCGCATCCTAAAACCGTTTTGTCGAAAGAAATTTATCGACGCAACCACTATCCACACAACAGAGCTCTCGCGCTGTTTGACCAAGCTGGATTTAACATCGCTCGGTGTCGCTTCGACATTAGGGGCTGGTGTTTATATTCTCATTGGAACTCTAGCGCGAGATGTCGCCGGTCCTGGTATAGTTTTGTCCTTTTTAGTGGCCGCTCTCGCCAGCCTGTTAGCTGGTTTGTGTTATGCCGAGTTTGGAGCGAGGGTTCCGCGTGTTGGCTCTGCCTACACATTCAGCTATGTTACCGTAGGTGAGCTTTGCGCTTTCATAATAGGTTGGAACTTGATTCTCGAGTATATAATAGGAGCTTCTTCGGTCGCTCTAGCATGGAGCTCGTACTTAGACTCTGCTTTGCTAAACGATGTCATACGAAATTTCACGATGTTTAATATGAGAAGACTCGACACTTCTGGAGTCATTGCAACGTATCCTGACTTTCTCGCGGCTTTTGTAACACTACTTATCGTGGTATCCTTGTGCTTTGGCGTTAAGTTCACTTCACTGACAAACAATGTGATCACAGCTCTCAACGTGTTGGTCATAGCATTTATCATAATCTTTGGGGGAAGTTTTGCACAAAGCAAAAACTGGACGGATGATTTTTTACCCTATGGTTTCTCTGGCGTGCTGGCCGCCTCCGCTTCCGCGTTTTACGCCTTTGTTGGGTTTGATATCATTGCAGCATCGGTCGAAGAATCTAACAATCCCTCGAAAGACGTACCTGTAGCCACAGTGCTTACCATAGGTGAGAATTTTAAATTCTTTGATTTGTAAGTTATTTAAAGCGTATATGTTTCTAGGATACTGAAAAAGAAAAACTAGTTTTCATTCGAAAGCGGACAGCATCCCTTCCCATCATTTGCTGAACATAACCTCTCCAAACATATTATGGAATCCTTAAGCACACCTGTGTCAGGTTGTTGTTTCCCATTACATCCCGGCCATGATAATTAAACTCGAGAGAACTAATATACTATAGTCCTGTTTTCGCGGAAAATAAAACAGTGGCGGATCCAGAGCTTGAGTTAAGGGAGTGGGGGGGGGCAGAGACTGCATGGATATGCTTAAAATCCCCTAGATCCGCCACTATAAAAGCGTGTCGTACCTTTGGCCTGCTGCTTGTAATAAAATGCTTTCGTTTACCATGTGCCCTCGATTGTAATAGGGAAATGTCGGCCTCTAGCCCACGTAAGACAGTTCCCTTTCATCCATTCGTGCGGCGTAACAACGAGTAAATTCTATATAAATAAAGAATTGTTCCTTATATTTCTTTAATGTGTCGTGTACATGTGTGTCTCGAGACGTTCTGTACATGACAAATGCGGGTGCGCTTTTGCACTCTCCTCAAGGTTCAGAACCGTGTACGGCATGTGTTAGTACAAAATACATAGCACAATACTATAGGCGAATCTTTGTTTACACTTTTTGCCTCATTAACATATGCTTATCACTATCTGATGACGCTAATGAAATAATAATAATTTCTTAGTCAGGAGCGCATTCAAGTTTAACAACCAACCAGGAACCTTCACATGCAAACGCACACGATCCAAAACTTGTCCCTTTATTTTTTACACAGTTAAGATCTCAGGACCCAATCGATCCGTCAAAGTCACAGACCATTTTATCTGCATCTCTACAAATGTCATCTATTGCATAACCTGCACGCTATGTAAGAAAATCTACATAGGCGAAACAGGGAGGAGACTGGCGGACCGCTTCCGCGAACACTTACGAGACGCAGAACAAAACAACACAGATGCGTCCAAACCAGTCGCGCGCCATTTCAATCTTCCTAACCACTCCCACCACAACATGACTATCTGCGGGCTATCCTTAAGCCCGGTTTCCATATAGTCGTCCCTGTTGCTTGAATCGTCTCAGTCGCTTCAAATTTTTGGAAGCGACAGGGACGATCATATGGAAACGCTCTAGCGATCACTCAGGACGATCCTTGCGACAGAAACGATCAGTCGTCCGAGATAGACTCGAGTTCTATCCTTGCGACAGAGACGACCGGAAATGACTCTCAAGCGATCGCTTATTTTTAATGGAAACCGGGTTCAAACGATAGAAGCGACAGAAGCGTTGGGACATATCCCATGAAGCACTTGATTGTTTACTTCTCGTCCATGTACGCGCTTCAAAGTGGCGGCAAGCAACTCGAATAACACCTCTACATTTATTGAAGAAATACAGCGGTACGAATGTCTTTATGACAAATTGTCGAAGGATTATAAGAACAGAAGAACCAGAGAAAACGTCTCGGAAACGATTGGCCAGAAATTCGGTCTTTCTGCGGAGGCCGTACCCAAAACCGATGCTTCCTTCGATGTTCTCTCTTCTTCTTCTTCGCAAAATATCACAGAGAATCAAATAACAAGCCAAAAGTCTTCTTCGATTGACTCCCGCCATTTTAACTTTGATTTAGGTGGCAAAAAAATTCCTATTGCCAGTCTTTTTTACCGTTTGATCCGATACAAACGATTTAATGGCAACCAAGGGATCGCAAGAATCGCTTCAATCGCGTCTGTCGTTTTTTCACCACGGGAGGCTCTTTTCAAGCGACAGAGACGATTCTAGCGACAGCGACGACTATATGGAAACCAGGCTTTACACCACGGGAACACAGAAAGCCGCAAAAATCTCGAACAAAAATTAATTTTTCAACTGGGTACACTCTCTCCACACGGAATCAATGAACGCTTCTCATTCCACTAATTTATTCACAAATTCATGTGACCATATCTTCACCAATGGCAAAGCTCCTCTACACTCTCATATAAACCACAACAACCCACAATTCCTCTATTCGCTCTGACAAAGGGCTAACGCTCGAAACGTCAGCTTTCCAAATCTTTCACGGTGGTAATTCAACCTTTATCAACTCGTTTGATAAAACCAATTTTTTTTTCTAATAAAATAAAAACTCTGAATATTGAAAGGGCATAACAGTTTAAGTTTTCTCTGAAAATTTGAGTCCAATTCATCGAATGGTTTCGGAGAAATTCTCTTCTAAAAGCTCGAAATTTTACAGGGGATGTACGGCTCATTAACTTTTTTGCTACCCAGCAATTTCGCAGCTTTTGATGTCTGATATTTCCTTCAATACTGCTTGCAAAGAGCTGAAAATTGCGCAAATTGCTCAACTTAATCAGCCCTTTCAACTTTTGCATTTAGCTCATGTATACGGCCACTGCTTCTATTAGGTAAGTCGTATGCTAATGAGCACAAATGTAAACAATGACGTCAGCAAAGATTCGCCTTGAAAGAAATTACAAACTTTTTTTTGTGATAAATTGCTTTCGATGTCTATTTAGTTTTTTGGAAGTTCAATGCTGTCATCCCTCTTCGTTTAGACTTCGCCGGTCATCAAACTTGCGGTTTTCAAGCGCCATGAGTGTGTGCCGTCAGCTTTTGTTGCTACGGGCTGCGGTTTGTAGTACGGTAGACCAAAGGCATTTGTGTATGATAACTTATACTGTCTCGATTTCTTAAATTTCCCATAACTCCCCCGGGCAATCTACAAGTTAACAAATACCAGGTTCGATTGAACAATCGTCTAAATACTTCCCTCCGTTGGGATTCGATTGATTCCAATAAGTGTCTTTGTTTACATGTCAGTGACATAGAGAAACGAAGAATACTTCAGCGCGCGCTTTTTAAAGTGGAACGTTTTAAAGTGAAACCTGGCAACGCGACGGTTTGATGTCACTATTAGTAAGCTACTTAACCTCCACGTGTTAAATGATCAACGGGATATCTCATCCCAAGATGGCTTTTTTGTTGAAAAGATTTGCACAGAAAAAGGTGATCGATCCGAACTCTCTAACGCAAACGCAATTGTCTCGATGTTTATCGGTATTCGACTTAACCACACTGGGCATTGGGAGCACGCTCGGAGCTGGAATCTATGTGTTAGCAGGAGAGGTAGCTCGATCAGTTGCTGGTCCTAGTATTGTAATTTCGTTCTTTGTTGCTGGAGTGGCCTCTGTTCTTTCTGGACTCTGTTATGCTGAATTTGGCGCTCGTGTACCGAAAGCAGGCTCGGCCTACATCTACAGCTATGTCACTGTGGGAGAACTGTGCGCCTTTATTATTGGGTGGAATTTATTCTTAGAGTATGTCATCGGTTGTGCGTCCTTAGCGCGAGCGTGGAGTGATTATTTTGATTCTACACTCAACGATACAATTCGAAATTTTGCGCTATCTCATCTTGGAGAAATCCAACTGAAGGGATTTGCATCTTATCCAGATTTTTTTGCATTTACTCTCGTCCTATTGGCGACGTTGATCCTAACCCTTGGAGTTAAAAACTCTTCCAGATTCAACACTTTCTTTACAGGGATCAATCTGTTTGTGATTCTTTTTATAACATGCGTTGGTTTATACTACGCAAAGGTCGAGAACTGGACACGTAATTTCGCACCCTATGGGATTTCTGGTGTGTTTTCCGGGGCAGCAACGTGTTTTTACGCTTTTATTGGTTTTGATGTGATTGCAACAACTGGTGAAGAGGCAAAGAATCCAAGTCGAACTATTCCAATATCTATAGTCCTGGCCCTTGGCATTTGCTTCCTTGCTTACTTTGGTGTCTCAGCAGTTTTAACGCTTATGTGGCCGTATGACCAGTTAGCTGAAAGAAGTGCCCTTCCTGAGGTGTTTGCCATGCGAGGAGCCCCGTGGGCCAAATACATCATTGCTGTGGGAGCCCTCTGTGGATTGAGTGCCTCCCTTATAGGAGGCTTATTTCCTTTACCCAGAATGCTCTACGCCATGGCAAGTGATGGCCTCATTTTCAAGTTTCTTGCAAAAGTCCACCCCAAGACAGAAACTCCAGTTATTGCTACCATTTTCTCTGGCTCACTAGCGGCGCTTCTTGCACTGATATTTGACCTCGCAGCTCTGGTTGAAATGATGTCAATTGGTACACTTCTTGCCTACACAATAGTAGCGTTGTGTGTGCTCTTGCTCCGCTATCAGCCAGGAACTGTGGGGATTGTTGAAGGCGGAGAGAACATATTTTTGAGCAATGAAGGTGCTTCAAATGACGGAGAAACTATCGGAGAAAACAATCAAGAGATGCATGACACAAACGGCCCCACCCAAGAAACCGCGCGGCGTGCAGCTCTTGGAATCTACAGCAGTCTGGCCGTGTTTCTCTTCGCCAGTATCTTCTTAATCTGGGGAACCGATGCGCTTGTAAATGCTCGTTCTTGGGCCATTCTAGTGGCTGTTGTGTTGGGTGCTCTTCTTATTGCCAGTATAGTGCTCCTTTTGCGTCAGCCCCAGAACAAGACGCCCCTGCCATTTAAGGTGCCTTGTGTACCAGCAATACCTTTGCTCTCGATATTTATTAACATCTTCCTGATCCTGAAGCTGTCGTTCTTGACCTGGATACGGTTTGCTGTTTGGATGATTACAGGTTTATCAATATACATTTTCTACGGTCTCCGGCACAGTGTGGAAGGAAAGAGACAGGGTGAACAAGAAGGCTATGTTCCCCTCGAGCAAATGGACAGCAGTAGAAGCGATCAATCAGAACCACAGGATGGTCAGAGTTTAAAAAAATAATAATAAAATAAGAAACTGTGTGAAATAAAGGCAATCAAGAGACTGGGGTATAAATTATGAGGCAATATTTAAAACGTTTCAGGTTAGATTTAGCGGATTTATTTCAAAATCTGGTTTCAGAACAAGAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P52569	Cationic amino acid transporter 2 OS=Homo sapiens OX=9606 GN=SLC7A2 PE=1 SV=2
B5D5N9	Cationic amino acid transporter 2 OS=Rattus norvegicus OX=10116 GN=Slc7a2 PE=1 SV=1
O08812	Cationic amino acid transporter 3 OS=Rattus norvegicus OX=10116 GN=Slc7a3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13906 all species →	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029485 all species →	Domain	Cationic amino acid transporter, C-terminal	Interproscan
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243 all species →	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13864	SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.