Detailed information of FUN_012795-T1 in Acropora pulchra

Genomic Location: ptg000008l:12933210...12963319
NR annotation: XP_015762178.1, PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X7 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
P31696Agrin OS=Gallus gallus OX=9031 GN=AGRN PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001081 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan
PF00054
all species →		Laminin_G_1Laminin G domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR050958
all species →		FamilyCell Adhesion and Cytoskeletal OrganizationInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45080
all species →		CONTACTIN 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24341EGFRAM; pikachurin-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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