Gene detail

Detailed information of FUN_012795-T1 in Acropora pulchra

Genomic Location: ptg000008l:12933210...12963319
NR annotation: XP_015762178.1, PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X7 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_012795-T1

ATGCCAGCAAGGACACAAACTGTTGCTGGAGGAGAGACGGCTACTTTCAGATGTGTGGTAAAAGAAGGCAATCCACCACCGGCAGTGGTCTGGAAACGAGAAAAAAGTGAAACACTAAACAGCACCAACGATGGTTTGTTGGTGATCCCTTATGCCACGGGTGAAAGTCAAGGCAAATATATATGTGAAGCAAAGAATGCACTCGGATCAACGAAAGCTGTTGCTTTGCTTGTTGTTCAAGGTCAGCCAAAAGTTATTTTAAGCCCGTCCAGTCCTGTTGTAGTAACATCAGGGAGTCCCGTTACGTTGGAATGCGCAACGGCAGGAGATCCTACTCCAATTGTCAAATGGCATGGTCCAAGGCAATCTCAGTCAAATCTAAAAGTAATTGAAAGTGTCCGTGGAGTGCTGAAGCTGGTTATTGAGGAAACGAGAAAGAATGATCAGGGTAACTACACGTGTCAAGCCCAGAACCTTGTAGGCGTGACAAGGGAAAGTGTACAACTAATTGTTTTGGTACCGAACGAGCCGCCAGAAATCTTTGTAGAACCACTTTTTCAAACAGTAATCGAAGGGGAAAAGGTTGTGTTTCGCTGCAATGCCTCTGGTATACCATCGCCGAGCATAGCATGGCAGAAAATGGGTTCTTATCTTAGAAATGACACACTTTATCAAAACGGACTGCTGACCATCGATTCGGCGAGCTCAAGCGATGCAGGAAGCTATTTCTGTAAAGCAGTGAACAGTGAAGGGGAAGACAGCCTTTACGTTCAACTTGAGGTTACGGTGCCACCCAAGGTTAACGTTACTCCATCTGAGATCTCTGTTAGAGAAGGAGATGCATTTAGCATTAACTGTGTGGTTAAGCCATCACTTCCTGTCACCTGGTCAAAGATTAATGGTAGCATCTTTGTTTCAAAGAACAATGGAACAGGAACATTATTCATCAAAAAGGCAGAATTGCGACATGCCGGGAAATATCGCTGCAGTGCTAGCAATGATGCAGGCTCCAGCGAAGGTTTCGTTCAAGTCATAGTTTATGTTGTACCCATAGTAGCGGCGTGGCCTGAGTCTGTAATTGGCATACCAAACTCAAATGTTACTTTCCAGTGTAACGCAAGCGGTATACCTAAGCCTGTGATATCGTGGAGAAAGGAGGATGGAGATATTCCCATGAGGCATTCTATTGTGCATGGTGTGCTGAAGATGACGAGTCTTGTTGGCGAGGATGATGGAAATTACATATGTACTGCTTCCAATACAGCTGGTGCGTCTGCGATTGCTGTAAGGCTCACAGTTGAAGCTTCTCCTAGTGTAACTATTAAAGGTGGAAAAACATTCCATACCGTCTCTGTTGCTGGTAATCTGACCCTCGATTGCATTGGGACGGGTATCCCTCAACCCAAGGTACAATGGTCCCGAGTTGTTAGTCCAATGTCTCAACCATTAACTTCGAAAGGTGGACTCCTGGTCATTCGGAACGCCCAGCATTTCCATGCAGGAACGTACAAGTGCGAAGTTTCCAACAGAGCTGGCTCTGTACATGCTCAGATCGCCATCTTAGTGCAAGAGGCTCCTAAAGTTACAATCATGCCACAAAAATCTCGGATAAAAGTTGGAGAGTCAGCGAAATTTACTTGTATCACAAGCGGCTTCCCAGTACCACAACTAACATGGTCGAAACTAAATGACTCGCTTCCCACAAGCAGTACCGTGCATGGACGAGTGATGAAGATAACGAATGCAACTGAAAAGGATGCTGGGATATATGTATGCAGTGCATTGAATGATGAGGGATCGACAAACGGAAGAGCATTGTTGGAAATGAAAGTGCCTGTACCACGCTTCACACAAAAACCGCTGTCCTACTTGACCCTACCACAACTAACTGGGGAACCTCTAAATTTCACCATTGAAATGGTGCTCATACCAGAAATCGCAGACGGGCTTATACTGTACAATGACCAGAGAAGCAACGGTTCTGTTGGCGACTTTATATCGTTCGGAATGTCCGACGGATTTGCTGAATTTAGATTCAACCTTGGCTTTGAACCTGCAATCATTCGAAGCCAGCAACCTTTGCCACTATACGAATGGCACGAAATTGTTTTAGAACGTTACCAAAGAGAAGGAAAGCTCACCATTGATGGCAAACTCTATACCACAGGAGTTTCTAAAGGGAAAAGTACGGGGCTGAATCTAAACCAGGATCTCTATGTGGGTGGAGTGCCTGACTTCTCTGCAATTAGTACGCTGTCAGGGTTCAAGTCAGGATTTATTGGCTGTTTGAGTTATTTAGTTATTGATGGCAAAAAGGCAAATTTAGGAACTCCACTGAGTCGCTTGGGGCTAGAAGATTGTGAAATTTGCCAAACAAGACCCTGCAAGAACGGTGGCACATGCACAGAGGTTGCTAGAGACTGGTCTTTTGTCTGTAATTGCAGATATGGTTATTCAGGAAAGACATGTCACTATTCTGGTCAGCGTTGTTCCCCTGGAGTGTGCAATGGAGGACGTTGTGAGAATGTTGGAAATGATAGCTTCAGATGTGTTTGTCCTGCAGGTTTCTTTGGGGAGAGGTGTGAGCAAGGCATTCCAATAGATACACCCATGTTCGAAGGGAACTCGTTTATGTCCTTTCCAGGAATAGAAGGAGCTGCTCGTCAGCTGAAGTTTTCTATGAAGTTTATGGTCCTTAAATGGAGACAAAACATGCTTTTGCTTTACAATGGCCAGAAAACATACCCTTATCGCGGGGATTTCATCTCACTTGCCATCAACGATGGGCACGTGGAATTTCGATTCGACATGGGAAGTGGTCCTGGACTCCTGCGCAGCGCTAAAACCTTCTCATTGGGAATTTGGCACACAGTCATAATACGCAGGCAACTGGATGAGGCAATCATGAAATTTGACGCCGAGCCTGCAGTTAAGGGATACTCACCGTGTTGTTTAGTGGGACTGAATCTAGGATTAGACCTGTTCATAGGAGGTGTGGATAACTTTGCTGCCGTTGACATCAATAAAATTGGCGTTAGCACAGGTTTCTTCGGCTGCATTTCAAGGGTATCTGTAGATGGAAGAGAAATAAATTTGCTGCGGTCAAACCTTAACCAGCGTGGAATCAAGCAATGTAAAGAGTGCTTACTGCCTTGTGAGATAAAACCGTGCCTCAACAATGCAACGTGTATTCCCGTGGGCAAAACTGGGTTTTTATGTTCATGTGCACCCGGATATACCGGAGAAAAGTGCGAGGCTAAAATTTTTGGGAAAAGAAATAATAGGACTTGTCTTAATGGTGGAGTACAGTCGTCGGCCTCTAACAGGACATGTAACTGTCCTATCGGATATGACGGCAGGCAGTGTGAGACTTCCCTTAGTATTGGTGACAGTGTTTCATTCAGTGGTGATGGTTTTTTAGAGTTCCCAGCGTTTGCTATGCAAGGATCAAGAGTAGCAACACCAGACTATGTGTCATTTGAAATAAAAACAGAAGCTCCGGATGGAATAATTCTATGGCAAGGAAGGAGACGAGATCACTTTGCAGTCGGATTAAGGAAAAGATTCGTAGAGTTCAGATTTGAGTTGGGATCAGGTCCAGCTGTTCTTCTATCTGAGGTACCACTCAATGATAGCCAGTGGCATTTTGTCGAGGTCTACAGAAGTTTTCGAGATGGTTCTCTGAAAGTGGACAAGTACAAAAATGTAACTGGCACTTCAGCTAAAGGGAGTAAAGGACTGAATATCGATGACGATTCACATATTTTTATAGGTGGAGGTCTCAATGTGGTCGATATGACTCATGGTAAATTCAATACTGGTTTTACTGGATGTATCAGAAATGTCCAATTCAAGATGACCAGAATTAATCTTCAACGGGAAGCGGTAAATGGAAGAAATGTTCTGCAATGTGGTGCTGAAATGTCAAAGAAATGA

Transcript

FUN_012795-T1

Protein

Uniprot

Uniprot term	Description
Q05793	Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
P98160	Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
P31696	Agrin OS=Gallus gallus OX=9031 GN=AGRN PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00054	Laminin_G_1	Laminin G domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001791	Domain	Laminin G domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24341	EGFRAM; pikachurin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala