Gene detail

Detailed information of FUN_012889-T2 in Dendrogyra cylindrus

Genomic Location: contig_19:2279847...2293526
NR annotation: XP_020627509.1, tip elongation aberrant protein 1-like [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_012889-T2

ATGCTTAAGTCTGTTCTGTCTGCCGCTGCGAGAATTATCCATGTCAGAGAAGGCCAGCCTCAGGATGGCACTGATTATTTGAAATTGTCAGAAGTAGACAGTGTTGTAGAGAACTTTGTCAAAGATGCCTCCAGCCAGTGTGACGCGAGTGTGAATGGCAAACTGACCCAGGCAGAGTTTGTTAGCTGGATGAGAAGACATCCTCTCATTGTGGACTCGGTATTCCAACACGCCAGTATTAAAGACAAGCAGTTCAACTCAGGATTACAGCATGATCGTGTTCAAGAGAGTCACAGGCCGCCTGTTTTTGTCACCACTACACAGCAGGGAACACGACGCACAGAGCTGTTAAGCCAAACATGGGTTGATGGCTTACAACAAGGTGCAGAAGAGGAACAGGCTGCTAATGAACCTGTGTTCAGCGGTAGCTATGCAGACGCCGATTACCTGTGGAGCCCAGTCTTCCCGGCCAGCCTAAGCATGCCTTGCGCGCGTAACAGGCACTCGGTGTGTGTTTGGGGTGGGGGCGTGTTCGTGTATGGAGGCCGAGGGACCAGAGGAACACTCAAAGACTTCTGGAGATATGATATAGCCTCCAATACTTGGAATAGCGTGCCAGTTGAAGGTGACTTCAGACCACCGTCTCTGCAGGAACATACTGCATTAACTTATAAGGGTAATATGTATGTGTTCGGAGGAGAATTCACCGCAACAAACGAGACGCCATTGTGGACTTTCAATTTTTGTGAACGTGTGTGGAGAAAGCAAGCAGCAAAGTCGTGGGGCCCAGGTACACGACGGTCACACACGGCCGTGATCCACGAGACGTCGATGTTCGTATTCGGTGGATATATCGATATGAGAGGTGCGAGCAACGAGCTATGGCAATACGAGTTTGACTCTTCAAAATGGGTCAGGCTCAAGTGGAAAGGAGAAGGACCTGGCGCGCGGTACAGTCACTCAGCGGCTGTTGGAGCAGCTGGTATGTGGGTGTATGGGGGCTTGGAAGGTCTACAGGCCAGGAATGATCTCTGGAGATGGAGTTTTGtgAGCTACTCGTGGTCTAAGATAAAGAGTCGTGGAGGTCCCCCAGCCTTGTTTGGACATTCTGCTATCAAGGTTGGAGATGGTATGTTAATATTTGGAGGTGAAACAACCGATGGTGCTCTACACAATACAATGTGGCGGTTTGATTtagGGAATCGTACTTGGAGCACTGTTCGCCCGCGGGGCGGGATATCCCCGCCCGTCCGTAGCTGTTTCTCCGAAGGGGTAGTTCCTTCATCCGCTTTTTTCTCGACCATTCGACCGTCTACGTCTCACTCTGCCCCGCCCTGCACCCCTATGCCGTCAGGCTTTCTTACAGACGACAGACAGGACAGCAGGCCGAACACCAGGGTGAAGTCTTGGTGTGAACCCGTCACCCGCTGGAATGTATCTGCGGCATCGCTGGGATCCCTTGATTCAATGGTGCCTTTACCAACCTCGGGGATAAAATTCACCGACGATAAACGTCGTCATAACCATACGGAGTCCACTTTTAGCTCAGAGGTTTACGAGAACTCAAAAGGAATGACTCTGTCGGACGATTCGCTACACGGAAAACAGAGTCATAATACCACGCGACATGAGTCACGTGATCAGTGGAAGCCTGAGACTGGTGCCCGCGCCCAGGCTCTTCCCGCTCAAGGTGTTTCCCGGGACAAAAAAGGCCGAGTGCATAGCCAAGAACTGTTAAGTGTCAATTCTGCCGTTAGCGCGGATTTGAGGAAATCTTTGACTCATCCTATTGCCTGCTTGTTGGTTCTTGGCGGGAAGACGCGGACCCAGGCAGACATGGGAAGAAGTCTCGACATATGGCGATGTGATATTGATCCAGTCAAGAAAAGCCAAACAgagcgagtggaaaaaataaacgtgAGCACTCCTGTCGCGACAGGCAACACTGGAACCGCGCTTTCTGTTCCCTACAATCATTTAGAGCGTGGTCCTTCGGAGGACACCGCTGATCCTGATGACGACATGGACGATGAATCAATGGGCAGCGACTTGGTCTTAGCAGACATGTCTGATAGCGACACTCGCAGTGTAGATTTCTTATTGGACGACTACGGCTCCGTCAGCATGTCACGTGGCTTTCCTAAAGTGTCGGTGTGA

Transcript

FUN_012889-T2

ccccccccccactcctctTTATTAGCAGTTAACGTTGGTAAAATTCAGGGAGCTTCTAGACTGCTTGccgtctgtttttctctcgaaattcagtaAGGGAGTGCGGTGTGAGAGTTAAGATGCGCGAAGAGGAATTGGGGCAAGACAATACCCCCGTTTTGCGTTCAGATTGGAGTACAAGTACGACTTTGTAAACCTAGTGCTAATGCTTTTGATTATCACAATTTTCGATTATCAcatatttcacaccaatctcgtTTTTCAAATGGTCAGAAATGTCACTGGATTGAGATTCAAAAGTTCGATCTCGTACTCGTACGAAGGTACTGAAGGTCTACTCTAGTCGGTAGGGTCAGTAGTGGGCAGTTCTTTCAGGGCAATTAAATTAATATATTTtgacatgcaaaaattttctgAAGCTTTCCTTAGACTAAAGGAATAGCTAGGCTATGATGTACCATCATCCGACGCTATCTACCTGTCAGTACAGACCAAATTAGCTCGTAGTTCACGcctatacatgtacagtacggTGATTAACGGTAGTCTCCAGCCCCCACGATAAGCTCTCCACAACGGTTATTTTTTGTGTGTCTAAATGGATAGACCAATATATCTGGAAATGCGTGGCATTTTGACCGCAGACTACTGACGTTCAAATTCGTCGGATTTTTTCCAAtgaggaaatttttttttaaaactttgttgGTGTCTCCAGCTACCTTCAATTCCGAAAAGCAACCTTAATAAGATCACTAAGACTTACCCAGTAGATAACGGATGCTGCATTTTCAGTTGAAGACTGTTAAAAAAGCCGTCACCAATATTATGCTCTCCTAATTTTATTGTTGGGTTTGTCGTTCATTGATGAAGTGCCCAAAGGGTCAAGTACACATtagctttattttgaaatcactgAATAAATATTTTCCCAGTGAGGCCTGAAAGACCCtgaaagaaaatatttctttgtaCCTTGCAGGCTTGCTCGGCGGGCTCTGTAAGTAATTTGAAGTTGTTCCTCAGTGTGAAATTGGTTTATTATCACGAGTAAAATACAACTGCCTTTTTTAACTTGCGTGACACAGAAGCAGTTGAAACACGCGAAGATTTTGTTTTAACCCATAGCAAAATCATGACTTGGATCGGAAATGACCTCACAGCGGCCAAAAATAACTTGGTTACGTCTTCCTTTCTATTCATCTGTAATCTCGTGCTATGAGTGAAGCGTGTAAAATGTTCGCAATCTTTTTCAGGCACGGATGGAGTCAGTATTTCTGAGATTAGCGTCATGCTTAAGTCTGTTCTGTCTGCCGCTGCGAGAATTATCCATGTCAGAGAAGGCCAGCCTCAGGATGGCACTGATTATTTGAAATTGTCAGAAGTAGACAGTGTTGTAGAGAACTTTGTCAAAGATGCCTCCAGCCAGTGTGACGCGAGTGTGAATGGCAAACTGACCCAGGCAGAGTTTGTTAGCTGGATGAGAAGACATCCTCTCATTGTGGACTCGGTATTCCAACACGCCAGTATTAAAGACAAGCAGTTCAACTCAGGATTACAGCATGATCGTGTTCAAGAGAGTCACAGGCCGCCTGTTTTTGTCACCACTACACAGCAGGGAACACGACGCACAGAGCTGTTAAGCCAAACATGGGTTGATGGCTTACAACAAGGTGCAGAAGAGGAACAGGCTGCTAATGAACCTGTGTTCAGCGGTAGCTATGCAGACGCCGATTACCTGTGGAGCCCAGTCTTCCCGGCCAGCCTAAGCATGCCTTGCGCGCGTAACAGGCACTCGGTGTGTGTTTGGGGTGGGGGCGTGTTCGTGTATGGAGGCCGAGGGACCAGAGGAACACTCAAAGACTTCTGGAGATATGATATAGCCTCCAATACTTGGAATAGCGTGCCAGTTGAAGGTGACTTCAGACCACCGTCTCTGCAGGAACATACTGCATTAACTTATAAGGGTAATATGTATGTGTTCGGAGGAGAATTCACCGCAACAAACGAGACGCCATTGTGGACTTTCAATTTTTGTGAACGTGTGTGGAGAAAGCAAGCAGCAAAGTCGTGGGGCCCAGGTACACGACGGTCACACACGGCCGTGATCCACGAGACGTCGATGTTCGTATTCGGTGGATATATCGATATGAGAGGTGCGAGCAACGAGCTATGGCAATACGAGTTTGACTCTTCAAAATGGGTCAGGCTCAAGTGGAAAGGAGAAGGACCTGGCGCGCGGTACAGTCACTCAGCGGCTGTTGGAGCAGCTGGTATGTGGGTGTATGGGGGCTTGGAAGGTCTACAGGCCAGGAATGATCTCTGGAGATGGAGTTTTGtgAGCTACTCGTGGTCTAAGATAAAGAGTCGTGGAGGTCCCCCAGCCTTGTTTGGACATTCTGCTATCAAGGTTGGAGATGGTATGTTAATATTTGGAGGTGAAACAACCGATGGTGCTCTACACAATACAATGTGGCGGTTTGATTtagGGAATCGTACTTGGAGCACTGTTCGCCCGCGGGGCGGGATATCCCCGCCCGTCCGTAGCTGTTTCTCCGAAGGGGTAGTTCCTTCATCCGCTTTTTTCTCGACCATTCGACCGTCTACGTCTCACTCTGCCCCGCCCTGCACCCCTATGCCGTCAGGCTTTCTTACAGACGACAGACAGGACAGCAGGCCGAACACCAGGGTGAAGTCTTGGTGTGAACCCGTCACCCGCTGGAATGTATCTGCGGCATCGCTGGGATCCCTTGATTCAATGGTGCCTTTACCAACCTCGGGGATAAAATTCACCGACGATAAACGTCGTCATAACCATACGGAGTCCACTTTTAGCTCAGAGGTTTACGAGAACTCAAAAGGAATGACTCTGTCGGACGATTCGCTACACGGAAAACAGAGTCATAATACCACGCGACATGAGTCACGTGATCAGTGGAAGCCTGAGACTGGTGCCCGCGCCCAGGCTCTTCCCGCTCAAGGTGTTTCCCGGGACAAAAAAGGCCGAGTGCATAGCCAAGAACTGTTAAGTGTCAATTCTGCCGTTAGCGCGGATTTGAGGAAATCTTTGACTCATCCTATTGCCTGCTTGTTGGTTCTTGGCGGGAAGACGCGGACCCAGGCAGACATGGGAAGAAGTCTCGACATATGGCGATGTGATATTGATCCAGTCAAGAAAAGCCAAACAgagcgagtggaaaaaataaacgtgAGCACTCCTGTCGCGACAGGCAACACTGGAACCGCGCTTTCTGTTCCCTACAATCATTTAGAGCGTGGTCCTTCGGAGGACACCGCTGATCCTGATGACGACATGGACGATGAATCAATGGGCAGCGACTTGGTCTTAGCAGACATGTCTGATAGCGACACTCGCAGTGTAGATTTCTTATTGGACGACTACGGCTCCGTCAGCATGTCACGTGGCTTTCCTAAAGTGTCGGTGTGAATTGGTGACGTCATGCCAAGACTCGTCCGTATGTTGAATCGCAGTTGTACGCAACTTTGTTCCCAAAAAGATGTAGTATTTTCTTGCGGCATTTAAATAATATATTTAGCTAACTGTTCAAAGCGTTTTACTCTTAAACTCTTGAATCCTCAGGAGAACCGTAAAATTCCGTTAATAAGCCCTACCAAATCTCGATTGAAAAAACGGTAACCCCCCACCCTCTGAATATAAGCCTTTGTGCGCATCGAAACGACCATATGGACAAATAAATTCTCCTGGGCTTATTGCCTGAATTTTGCGTTGTTTTCAGCAAAACTATTCTCAGAATATTTTTACAGGCATTTCGAAATATTCGCCTTATTTATCACAAACAACTAAACGGAGCCCTGCAAAAGAAATTTCAAATTATTCTCATCAGTGGCGATGTGATGTTCTGTCATTGATTTCAAGACACTGTTGCTACATTTTTTGTATCGTACTTGGTCGGCTGGTTTCCGCGTATCTTCGGCTGTGTCCGTATATTGTCGGCTTGCAATCGCCTTACCTTTCGCgaattgcaaataaattggaAAATAAGTCCGACTTGCAAGCGTATATTTGTGCAtgataaaatatttataataaaaGTTGTATTATATCGGAAAATCAAGTTTCTACCGATGATAAGAATCGTTGTATAATAATAAATCATAATTTCGATATATTTACCAATTAATTTCGTATTTAACGGCGTTTGAAATTGTGTTTACGTCCATGTTATTTTTTCTGTCATTCGTTTATGAAACTAAGAAGAGATTGTAATTGTGTAACAGGTTGTAAATCGTATAAAAGTTATAAACAGTATAAGCATTAAATCTTTGAAATAGTTTGCCAACAAAGTATATAACGTTGTCTCGAAGAGGAAACACGAACATAAtacaaatattttgaaatgttttaagaCAGCAACAAATAAAGGAAGAATATAAAATTATGGCGCGATATTCTCACTGACATGTATTGACACTTTGCATCAGTAGTGTACTTTCGATATATTAACCTTCAGCTTGGTAGCGAGGCTTTcataacaaacaaaacagaCAATTTCCGAGCCGTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003991 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR011043 all species →	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR052637 all species →	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461 all species →	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23337	MKLN1; muskelin	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.